miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 204629 0.72 0.62748
Target:  5'- uUCG-GAccgCCGAGUuuGGCAGCGGCu -3'
miRNA:   3'- -GGCgCUacaGGCUCAggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 228467 0.71 0.637163
Target:  5'- aCCGCGuUGcucaUCgCGAGUCCGGCGucGCGGg -3'
miRNA:   3'- -GGCGCuAC----AG-GCUCAGGCCGU--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 70071 0.71 0.642971
Target:  5'- gCCGCGAUccucaaaggcgcGgaccCCGAGgcgacgagcagcaCCGGCAGCGGCg -3'
miRNA:   3'- -GGCGCUA------------Ca---GGCUCa------------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168637 0.71 0.646842
Target:  5'- gCCGCGGg--CgGAG-CCGGCgcGGCGACg -3'
miRNA:   3'- -GGCGCUacaGgCUCaGGCCG--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 30588 0.71 0.656511
Target:  5'- gCCGCGGcgagcgccucGUCCGcGUUCcgaGGCAGCGACg -3'
miRNA:   3'- -GGCGCUa---------CAGGCuCAGG---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 123001 0.71 0.666163
Target:  5'- aCGCGAUcgacGUCCGGGUaUUGGCGGCcACg -3'
miRNA:   3'- gGCGCUA----CAGGCUCA-GGCCGUCGcUG- -5'
15741 5' -58.5 NC_004065.1 + 116307 0.71 0.67579
Target:  5'- uCCGaGGUGUCgGcGUCggcggCGGCAGCGGCg -3'
miRNA:   3'- -GGCgCUACAGgCuCAG-----GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59720 0.71 0.685385
Target:  5'- gCUGcCGAUGUuuaCCGAc-CCGGCGGCGAUg -3'
miRNA:   3'- -GGC-GCUACA---GGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 71961 0.7 0.694941
Target:  5'- gCCGcCGGUGgagCCGGGcagcCCGGaGGCGACg -3'
miRNA:   3'- -GGC-GCUACa--GGCUCa---GGCCgUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 155139 0.7 0.694941
Target:  5'- cCCGCGA-GUaCGAGgUCGGCuGCGACc -3'
miRNA:   3'- -GGCGCUaCAgGCUCaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 24844 0.7 0.694941
Target:  5'- aCGCGgcGcCCGAugUUGGCGGCGACg -3'
miRNA:   3'- gGCGCuaCaGGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 83438 0.7 0.694941
Target:  5'- aCgGCGuUG-CCGGGcUCCGGCAcgaGCGGCa -3'
miRNA:   3'- -GgCGCuACaGGCUC-AGGCCGU---CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 30023 0.7 0.704449
Target:  5'- aCCGCGGUGcCCGucaagCUGGUGGCGGa -3'
miRNA:   3'- -GGCGCUACaGGCuca--GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 139901 0.7 0.704449
Target:  5'- gCCGCGggGccUCCG-G-CCGGCGGCGcCa -3'
miRNA:   3'- -GGCGCuaC--AGGCuCaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 128732 0.7 0.704449
Target:  5'- -gGCGGcUGgccCCGAGgcagccgUCGGCAGCGGCa -3'
miRNA:   3'- ggCGCU-ACa--GGCUCa------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 131222 0.7 0.712961
Target:  5'- gCCGCagaagucGAUGUCgGGGUCuCGGUcgucuccguGGCGGCg -3'
miRNA:   3'- -GGCG-------CUACAGgCUCAG-GCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 128400 0.7 0.713903
Target:  5'- gCUGUGggGgCCGAG--CGGCAGCGGCg -3'
miRNA:   3'- -GGCGCuaCaGGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 191895 0.7 0.723295
Target:  5'- aUGCGcacgCCGaAGUCCGGC-GCGACg -3'
miRNA:   3'- gGCGCuacaGGC-UCAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148858 0.7 0.732616
Target:  5'- gCCGCGA---UCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCGCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 136614 0.7 0.740939
Target:  5'- gUGCGGggcgcugGUCCGAggcggcgGUCCGG-AGCGGCg -3'
miRNA:   3'- gGCGCUa------CAGGCU-------CAGGCCgUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.