miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 136668 0.7 0.74186
Target:  5'- -aGCGAcGggCGGGUCUGGCcGGCGGCg -3'
miRNA:   3'- ggCGCUaCagGCUCAGGCCG-UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168225 0.69 0.751018
Target:  5'- -aGCGccGUCCGAG-CUGGUAGaUGACg -3'
miRNA:   3'- ggCGCuaCAGGCUCaGGCCGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 163432 0.69 0.769044
Target:  5'- gCCGCGGUGgCCGccgCCGuGCAGuCGGCc -3'
miRNA:   3'- -GGCGCUACaGGCucaGGC-CGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 82422 0.69 0.777898
Target:  5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3'
miRNA:   3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 173441 0.69 0.777898
Target:  5'- -gGUGAcGUUCGAcGUaCCGGUGGCGGCg -3'
miRNA:   3'- ggCGCUaCAGGCU-CA-GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 178198 0.69 0.786634
Target:  5'- aCGCGAUGgaucggGAGUCCgccauccgGGCGGCGAa -3'
miRNA:   3'- gGCGCUACagg---CUCAGG--------CCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 121120 0.69 0.786634
Target:  5'- aCGUaGAUGUCCGAGUgCGaGCAGgagagGACg -3'
miRNA:   3'- gGCG-CUACAGGCUCAgGC-CGUCg----CUG- -5'
15741 5' -58.5 NC_004065.1 + 68090 0.69 0.786634
Target:  5'- aCGCGAgcaCCGAGUCgcuaCGGaCGGUGACu -3'
miRNA:   3'- gGCGCUacaGGCUCAG----GCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 221744 0.69 0.795246
Target:  5'- aCCGCGGccccgaucaGUCCGAugagcagaaagGUCaCGGCcGCGACg -3'
miRNA:   3'- -GGCGCUa--------CAGGCU-----------CAG-GCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 102910 0.69 0.795246
Target:  5'- gCCGCGAUGgggGAGaaCUGGaCGGCGACg -3'
miRNA:   3'- -GGCGCUACaggCUCa-GGCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 194295 0.69 0.798655
Target:  5'- aCCGCGAucUGgcgCCGAGUCgccagCGGUAccagucuuccaggucGCGACg -3'
miRNA:   3'- -GGCGCU--ACa--GGCUCAG-----GCCGU---------------CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 66734 0.68 0.803727
Target:  5'- cCCGUGccGUCgGAccCCGGCGGCGuCg -3'
miRNA:   3'- -GGCGCuaCAGgCUcaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 160581 0.68 0.803727
Target:  5'- uCUGCGAcacgaUGUCCgucGAGUCCaGCAGguCGGCg -3'
miRNA:   3'- -GGCGCU-----ACAGG---CUCAGGcCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 120527 0.68 0.803727
Target:  5'- cUCGaCGAUGUCgaGGGUcuccggugugCCGGCGGCGGu -3'
miRNA:   3'- -GGC-GCUACAGg-CUCA----------GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 59757 0.68 0.812068
Target:  5'- aCCGCG-UGgCCGAuGguggCGGCGGCGGCc -3'
miRNA:   3'- -GGCGCuACaGGCU-Cag--GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 10951 0.68 0.812068
Target:  5'- gCGCGaAUGUCCGGuGUCUGGUgcguaauaauAGCGcCa -3'
miRNA:   3'- gGCGC-UACAGGCU-CAGGCCG----------UCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 146048 0.68 0.812068
Target:  5'- aUCGCGAUGUCCGAGUgUGucaaGGuCGAUc -3'
miRNA:   3'- -GGCGCUACAGGCUCAgGCcg--UC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 194077 0.68 0.812068
Target:  5'- gCGCGA-GUCCGAcgaccUgCGGCcGCGACa -3'
miRNA:   3'- gGCGCUaCAGGCUc----AgGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168834 0.68 0.815364
Target:  5'- gCCGCGGguccUGgccuacgCCGGGUUCGGCGGUuccaacccgaucuucGACg -3'
miRNA:   3'- -GGCGCU----ACa------GGCUCAGGCCGUCG---------------CUG- -5'
15741 5' -58.5 NC_004065.1 + 65196 0.68 0.81945
Target:  5'- aUCGCGGUuuccUCCucggaaacggccaGAGUgCCGGCGGUGGCg -3'
miRNA:   3'- -GGCGCUAc---AGG-------------CUCA-GGCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.