Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15741 | 5' | -58.5 | NC_004065.1 | + | 143118 | 0.66 | 0.91634 |
Target: 5'- gCGCGccG-CCGAGggcgagaCCGGCGccGCGACc -3' miRNA: 3'- gGCGCuaCaGGCUCa------GGCCGU--CGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 119661 | 0.66 | 0.91634 |
Target: 5'- gCGCGAgagGUCCcAG-CCGcuGCGGUGGCu -3' miRNA: 3'- gGCGCUa--CAGGcUCaGGC--CGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 141719 | 0.66 | 0.91634 |
Target: 5'- gCGCGAcGaggCCGAGgacgugaacgCCGGCcucaucaacGGCGACg -3' miRNA: 3'- gGCGCUaCa--GGCUCa---------GGCCG---------UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 211506 | 0.66 | 0.91634 |
Target: 5'- aCCGuCGGguucgGcUCUGAGggucgUCGGUGGCGACg -3' miRNA: 3'- -GGC-GCUa----C-AGGCUCa----GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 37411 | 0.66 | 0.91634 |
Target: 5'- aCGCGGUGUCCGA---CGGC-GCGuucACg -3' miRNA: 3'- gGCGCUACAGGCUcagGCCGuCGC---UG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 127108 | 0.66 | 0.91634 |
Target: 5'- uCCGuCGccGUCC-AGUUcucccccaucgCGGCGGCGGCg -3' miRNA: 3'- -GGC-GCuaCAGGcUCAG-----------GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 56251 | 0.66 | 0.91634 |
Target: 5'- gCCG-GAUGUCC----CUGGCGGCGAUc -3' miRNA: 3'- -GGCgCUACAGGcucaGGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 21033 | 0.66 | 0.912463 |
Target: 5'- aCCGCGGUGcgagauaauaugcUCCGcGGgcuggaacgucaccaUCCGGCAGCcGAa -3' miRNA: 3'- -GGCGCUAC-------------AGGC-UC---------------AGGCCGUCG-CUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 45286 | 0.66 | 0.91077 |
Target: 5'- uCUGCucgGaaUCCGAG-CCGaGCGGCGACc -3' miRNA: 3'- -GGCGcuaC--AGGCUCaGGC-CGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 60475 | 0.66 | 0.91077 |
Target: 5'- gCGCGcagaaaCCGAGa-CGGCGGCGGCg -3' miRNA: 3'- gGCGCuaca--GGCUCagGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 167413 | 0.66 | 0.91077 |
Target: 5'- gCCGCGGcUG-CUGccgCCGGCGGgGGCg -3' miRNA: 3'- -GGCGCU-ACaGGCucaGGCCGUCgCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 130629 | 0.66 | 0.910201 |
Target: 5'- gCUGCGAgcgcaccUGUCgcuCGAGUCgGGaCAGuCGGCg -3' miRNA: 3'- -GGCGCU-------ACAG---GCUCAGgCC-GUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 153225 | 0.66 | 0.909058 |
Target: 5'- aCgGCGAUGaaCGGugauagcguucgccGUCgCGGCGGCGAUg -3' miRNA: 3'- -GgCGCUACagGCU--------------CAG-GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 160556 | 0.66 | 0.904989 |
Target: 5'- gCCGCGua--CCGcAG-CCGGC-GCGACa -3' miRNA: 3'- -GGCGCuacaGGC-UCaGGCCGuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 98367 | 0.66 | 0.898998 |
Target: 5'- gCCGCGAUGUUUuuGUCauacuggGGUGGUGGCg -3' miRNA: 3'- -GGCGCUACAGGcuCAGg------CCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 150889 | 0.66 | 0.898998 |
Target: 5'- uCCaGCGAcgaGUCCGucgggaacaaggGGUCCGaCGGCGGCu -3' miRNA: 3'- -GG-CGCUa--CAGGC------------UCAGGCcGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 97224 | 0.66 | 0.898387 |
Target: 5'- -gGgGAUGUUCGGggucgcGUCCGGCgcacggcgcuucuGGCGACc -3' miRNA: 3'- ggCgCUACAGGCU------CAGGCCG-------------UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 159804 | 0.66 | 0.89716 |
Target: 5'- gCGCGAUcgucagcaggucucGuUCCGucUCCGGCAGCaGCa -3' miRNA: 3'- gGCGCUA--------------C-AGGCucAGGCCGUCGcUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 27141 | 0.66 | 0.892799 |
Target: 5'- aCGaCGAg--CCGGGUCCGaGCAacacacgccGCGGCa -3' miRNA: 3'- gGC-GCUacaGGCUCAGGC-CGU---------CGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 75577 | 0.66 | 0.892799 |
Target: 5'- gCCGUGAcGUUCGuGUcgCCGGCGGgGGg -3' miRNA: 3'- -GGCGCUaCAGGCuCA--GGCCGUCgCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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