Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 5' | -58.5 | NC_004065.1 | + | 63826 | 0.66 | 0.892799 |
Target: 5'- aCCGUGAUGgCUc--UCCGGCAGUGGa -3' miRNA: 3'- -GGCGCUACaGGcucAGGCCGUCGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 148623 | 0.66 | 0.892799 |
Target: 5'- uCCaGCGucUGUCUGGacagCGGCAGCGACu -3' miRNA: 3'- -GG-CGCu-ACAGGCUcag-GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 64273 | 0.66 | 0.892799 |
Target: 5'- aCGC--UGUCCGAGUUCcuggaaGGC-GCGGCg -3' miRNA: 3'- gGCGcuACAGGCUCAGG------CCGuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 78483 | 0.66 | 0.892799 |
Target: 5'- gCCGCGucaagcgcGcCCGAcaccgcccggCCGGCAGCGGCc -3' miRNA: 3'- -GGCGCua------CaGGCUca--------GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 133507 | 0.66 | 0.892799 |
Target: 5'- uCCGCuacgGUCCGAGUC-GGUcgccgagauGGUGACg -3' miRNA: 3'- -GGCGcua-CAGGCUCAGgCCG---------UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 1870 | 0.66 | 0.892799 |
Target: 5'- uCUGUGccGUUCcacgGAGUCuCGGCAGCgGACg -3' miRNA: 3'- -GGCGCuaCAGG----CUCAG-GCCGUCG-CUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 27141 | 0.66 | 0.892799 |
Target: 5'- aCGaCGAg--CCGGGUCCGaGCAacacacgccGCGGCa -3' miRNA: 3'- gGC-GCUacaGGCUCAGGC-CGU---------CGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 75577 | 0.66 | 0.892799 |
Target: 5'- gCCGUGAcGUUCGuGUcgCCGGCGGgGGg -3' miRNA: 3'- -GGCGCUaCAGGCuCA--GGCCGUCgCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 101801 | 0.67 | 0.886397 |
Target: 5'- aUGaUGAUGaCCGAcUUCGGCGGUGGCg -3' miRNA: 3'- gGC-GCUACaGGCUcAGGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 148803 | 0.67 | 0.886397 |
Target: 5'- aCGaCGAccggcaGUCCGAGUCCGcGCGGUa-- -3' miRNA: 3'- gGC-GCUa-----CAGGCUCAGGC-CGUCGcug -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 150405 | 0.67 | 0.886397 |
Target: 5'- cCCGCagcGUCCGcgcgcgcagcgGGUCCGGCcuguccaacaGGUGACa -3' miRNA: 3'- -GGCGcuaCAGGC-----------UCAGGCCG----------UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 129565 | 0.67 | 0.885745 |
Target: 5'- gCCGaugcCGGUGuUCCGGGUggagaugCCGGagaAGCGGCa -3' miRNA: 3'- -GGC----GCUAC-AGGCUCA-------GGCCg--UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 41028 | 0.67 | 0.879793 |
Target: 5'- uCCGUGA-GUCCgucgaagccgcaGAGcucgggCCGcGCGGCGACg -3' miRNA: 3'- -GGCGCUaCAGG------------CUCa-----GGC-CGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 105543 | 0.67 | 0.879793 |
Target: 5'- uCCGCGcgGcCCuGGacCCGGCgcAGCGGCa -3' miRNA: 3'- -GGCGCuaCaGGcUCa-GGCCG--UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 68529 | 0.67 | 0.879793 |
Target: 5'- cCCG-GAgg-CCGAGga-GGCGGCGGCg -3' miRNA: 3'- -GGCgCUacaGGCUCaggCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 155378 | 0.67 | 0.875735 |
Target: 5'- gCCGCGGUccggaccucagacCCGGGUagCGGUGGCGGCg -3' miRNA: 3'- -GGCGCUAca-----------GGCUCAg-GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 29655 | 0.67 | 0.872991 |
Target: 5'- uCCGuCGAgaacgugGUCaggaaaGAGUCCGGCAGguugcugagccuCGGCg -3' miRNA: 3'- -GGC-GCUa------CAGg-----CUCAGGCCGUC------------GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 83474 | 0.67 | 0.872991 |
Target: 5'- cCCGCGAcG-CCGAcgauGUCgGGCAGgcCGACc -3' miRNA: 3'- -GGCGCUaCaGGCU----CAGgCCGUC--GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 128548 | 0.67 | 0.872991 |
Target: 5'- -aGUGGUGUggCUGuGUCugcgcccgcagCGGCAGCGACg -3' miRNA: 3'- ggCGCUACA--GGCuCAG-----------GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 17279 | 0.67 | 0.872991 |
Target: 5'- aCCGCcggaGGUGgugUCGGGUgCGGCGGaGACa -3' miRNA: 3'- -GGCG----CUACa--GGCUCAgGCCGUCgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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