miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 17279 0.67 0.872991
Target:  5'- aCCGCcggaGGUGgugUCGGGUgCGGCGGaGACa -3'
miRNA:   3'- -GGCG----CUACa--GGCUCAgGCCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 83474 0.67 0.872991
Target:  5'- cCCGCGAcG-CCGAcgauGUCgGGCAGgcCGACc -3'
miRNA:   3'- -GGCGCUaCaGGCU----CAGgCCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 188981 0.67 0.865997
Target:  5'- gCCGCGcgGcCCGAGcUCugCGGCuuCGACg -3'
miRNA:   3'- -GGCGCuaCaGGCUC-AG--GCCGucGCUG- -5'
15741 5' -58.5 NC_004065.1 + 47873 0.67 0.865997
Target:  5'- gCCGCGGUGUgcuucggugCCGGGUaCCGuaAGUGGu -3'
miRNA:   3'- -GGCGCUACA---------GGCUCA-GGCcgUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 130014 0.67 0.865997
Target:  5'- -gGCGAUG-CUGua--CGGCGGCGGCg -3'
miRNA:   3'- ggCGCUACaGGCucagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 104000 0.67 0.865997
Target:  5'- cCUGCGGcaaGaCUGAGUCUGGCGaCGACa -3'
miRNA:   3'- -GGCGCUa--CaGGCUCAGGCCGUcGCUG- -5'
15741 5' -58.5 NC_004065.1 + 43354 0.67 0.85589
Target:  5'- gCCGCGuccccgacacucGUCCGAGUCgacgacguauCGGCGGCccGACc -3'
miRNA:   3'- -GGCGCua----------CAGGCUCAG----------GCCGUCG--CUG- -5'
15741 5' -58.5 NC_004065.1 + 61682 0.67 0.851448
Target:  5'- gCGCGAgggGUCCGcagcgcgucacGUCCGcggcGUAGCGGCg -3'
miRNA:   3'- gGCGCUa--CAGGCu----------CAGGC----CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 186100 0.67 0.851448
Target:  5'- uCCGUGAUGU--GuuUCUGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUACAggCucAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 202592 0.67 0.851448
Target:  5'- aCGCGGUGggaCGGGcagaggCUGGguGCGAUg -3'
miRNA:   3'- gGCGCUACag-GCUCa-----GGCCguCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 163419 0.67 0.851448
Target:  5'- cCCGCGGcuccggauccUGUCCGcGUCCaucguGCGGCaGGCg -3'
miRNA:   3'- -GGCGCU----------ACAGGCuCAGGc----CGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 48518 0.68 0.843904
Target:  5'- gCCgGCGAUGUugCCGAccaUCUGGUAGaCGGCa -3'
miRNA:   3'- -GG-CGCUACA--GGCUc--AGGCCGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 162041 0.68 0.843904
Target:  5'- cCCGCaguacaugGUCCauuccugcggGGGUuucaCCGGCAGCGACu -3'
miRNA:   3'- -GGCGcua-----CAGG----------CUCA----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 140679 0.68 0.843904
Target:  5'- cCUGCGGccUGUCgugccuCGAGuUCUGGCAGCG-Cg -3'
miRNA:   3'- -GGCGCU--ACAG------GCUC-AGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 97931 0.68 0.836188
Target:  5'- gCCGCGc-GUCCGGcaCCGGC-GUGGCa -3'
miRNA:   3'- -GGCGCuaCAGGCUcaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 1119 0.68 0.836188
Target:  5'- cCCGUGGUGUCUG---UCGGCuGCGAg -3'
miRNA:   3'- -GGCGCUACAGGCucaGGCCGuCGCUg -5'
15741 5' -58.5 NC_004065.1 + 84093 0.68 0.836188
Target:  5'- uCCGCc--GUCCGuuUCUGGUcGCGACa -3'
miRNA:   3'- -GGCGcuaCAGGCucAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59157 0.68 0.828305
Target:  5'- aCgGCGAgaGUCCGA-UCgGGCGcGCGGCg -3'
miRNA:   3'- -GgCGCUa-CAGGCUcAGgCCGU-CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 48789 0.68 0.828305
Target:  5'- cUCGUGGUGUCCaGGUCCcguccacGCAGcCGGCc -3'
miRNA:   3'- -GGCGCUACAGGcUCAGGc------CGUC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.