miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 1119 0.68 0.836188
Target:  5'- cCCGUGGUGUCUG---UCGGCuGCGAg -3'
miRNA:   3'- -GGCGCUACAGGCucaGGCCGuCGCUg -5'
15741 5' -58.5 NC_004065.1 + 1870 0.66 0.892799
Target:  5'- uCUGUGccGUUCcacgGAGUCuCGGCAGCgGACg -3'
miRNA:   3'- -GGCGCuaCAGG----CUCAG-GCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 4661 0.74 0.494947
Target:  5'- gCCGCGGgcGUCCaGAGacagaggacUCCGGCGGCgGACa -3'
miRNA:   3'- -GGCGCUa-CAGG-CUC---------AGGCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 10951 0.68 0.812068
Target:  5'- gCGCGaAUGUCCGGuGUCUGGUgcguaauaauAGCGcCa -3'
miRNA:   3'- gGCGC-UACAGGCU-CAGGCCG----------UCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 17279 0.67 0.872991
Target:  5'- aCCGCcggaGGUGgugUCGGGUgCGGCGGaGACa -3'
miRNA:   3'- -GGCG----CUACa--GGCUCAgGCCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 18049 0.73 0.554442
Target:  5'- gCGCGAgg-UCGAGUCugaucucgacgauggCGGCAGCGACc -3'
miRNA:   3'- gGCGCUacaGGCUCAG---------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 21033 0.66 0.912463
Target:  5'- aCCGCGGUGcgagauaauaugcUCCGcGGgcuggaacgucaccaUCCGGCAGCcGAa -3'
miRNA:   3'- -GGCGCUAC-------------AGGC-UC---------------AGGCCGUCG-CUg -5'
15741 5' -58.5 NC_004065.1 + 24844 0.7 0.694941
Target:  5'- aCGCGgcGcCCGAugUUGGCGGCGACg -3'
miRNA:   3'- gGCGCuaCaGGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 26421 0.66 0.892799
Target:  5'- aCGgGAcagaggacucGUCCGAGUCCGGaCuGCGGu -3'
miRNA:   3'- gGCgCUa---------CAGGCUCAGGCC-GuCGCUg -5'
15741 5' -58.5 NC_004065.1 + 27141 0.66 0.892799
Target:  5'- aCGaCGAg--CCGGGUCCGaGCAacacacgccGCGGCa -3'
miRNA:   3'- gGC-GCUacaGGCUCAGGC-CGU---------CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 29592 0.72 0.588843
Target:  5'- gCCGCGGUGaCCGcGGUCCuGCAG-GACu -3'
miRNA:   3'- -GGCGCUACaGGC-UCAGGcCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 29655 0.67 0.872991
Target:  5'- uCCGuCGAgaacgugGUCaggaaaGAGUCCGGCAGguugcugagccuCGGCg -3'
miRNA:   3'- -GGC-GCUa------CAGg-----CUCAGGCCGUC------------GCUG- -5'
15741 5' -58.5 NC_004065.1 + 30023 0.7 0.704449
Target:  5'- aCCGCGGUGcCCGucaagCUGGUGGCGGa -3'
miRNA:   3'- -GGCGCUACaGGCuca--GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 30588 0.71 0.656511
Target:  5'- gCCGCGGcgagcgccucGUCCGcGUUCcgaGGCAGCGACg -3'
miRNA:   3'- -GGCGCUa---------CAGGCuCAGG---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 33289 0.73 0.531836
Target:  5'- aCGcCGAUGUUgGGGUa-GGCGGCGACg -3'
miRNA:   3'- gGC-GCUACAGgCUCAggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 35599 0.72 0.588843
Target:  5'- uCgGCGGUGUCggugCGGGaUCCacGGCGGCGGCg -3'
miRNA:   3'- -GgCGCUACAG----GCUC-AGG--CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 37411 0.66 0.91634
Target:  5'- aCGCGGUGUCCGA---CGGC-GCGuucACg -3'
miRNA:   3'- gGCGCUACAGGCUcagGCCGuCGC---UG- -5'
15741 5' -58.5 NC_004065.1 + 41028 0.67 0.879793
Target:  5'- uCCGUGA-GUCCgucgaagccgcaGAGcucgggCCGcGCGGCGACg -3'
miRNA:   3'- -GGCGCUaCAGG------------CUCa-----GGC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 43354 0.67 0.85589
Target:  5'- gCCGCGuccccgacacucGUCCGAGUCgacgacguauCGGCGGCccGACc -3'
miRNA:   3'- -GGCGCua----------CAGGCUCAG----------GCCGUCG--CUG- -5'
15741 5' -58.5 NC_004065.1 + 44525 0.76 0.416673
Target:  5'- gCGCGAUGUuaCCGGGgaCGGUGGCGGCg -3'
miRNA:   3'- gGCGCUACA--GGCUCagGCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.