miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 45286 0.66 0.91077
Target:  5'- uCUGCucgGaaUCCGAG-CCGaGCGGCGACc -3'
miRNA:   3'- -GGCGcuaC--AGGCUCaGGC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 47873 0.67 0.865997
Target:  5'- gCCGCGGUGUgcuucggugCCGGGUaCCGuaAGUGGu -3'
miRNA:   3'- -GGCGCUACA---------GGCUCA-GGCcgUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 48518 0.68 0.843904
Target:  5'- gCCgGCGAUGUugCCGAccaUCUGGUAGaCGGCa -3'
miRNA:   3'- -GG-CGCUACA--GGCUc--AGGCCGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 48789 0.68 0.828305
Target:  5'- cUCGUGGUGUCCaGGUCCcguccacGCAGcCGGCc -3'
miRNA:   3'- -GGCGCUACAGGcUCAGGc------CGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 56111 0.74 0.513256
Target:  5'- gCGCGGUGUauaggaucuaCCGAGUguugaGGCGGCGGCg -3'
miRNA:   3'- gGCGCUACA----------GGCUCAgg---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 56251 0.66 0.91634
Target:  5'- gCCG-GAUGUCC----CUGGCGGCGAUc -3'
miRNA:   3'- -GGCgCUACAGGcucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59157 0.68 0.828305
Target:  5'- aCgGCGAgaGUCCGA-UCgGGCGcGCGGCg -3'
miRNA:   3'- -GgCGCUa-CAGGCUcAGgCCGU-CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59720 0.71 0.685385
Target:  5'- gCUGcCGAUGUuuaCCGAc-CCGGCGGCGAUg -3'
miRNA:   3'- -GGC-GCUACA---GGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59757 0.68 0.812068
Target:  5'- aCCGCG-UGgCCGAuGguggCGGCGGCGGCc -3'
miRNA:   3'- -GGCGCuACaGGCU-Cag--GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 60475 0.66 0.91077
Target:  5'- gCGCGcagaaaCCGAGa-CGGCGGCGGCg -3'
miRNA:   3'- gGCGCuaca--GGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 61682 0.67 0.851448
Target:  5'- gCGCGAgggGUCCGcagcgcgucacGUCCGcggcGUAGCGGCg -3'
miRNA:   3'- gGCGCUa--CAGGCu----------CAGGC----CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 63826 0.66 0.892799
Target:  5'- aCCGUGAUGgCUc--UCCGGCAGUGGa -3'
miRNA:   3'- -GGCGCUACaGGcucAGGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 64273 0.66 0.892799
Target:  5'- aCGC--UGUCCGAGUUCcuggaaGGC-GCGGCg -3'
miRNA:   3'- gGCGcuACAGGCUCAGG------CCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65196 0.68 0.81945
Target:  5'- aUCGCGGUuuccUCCucggaaacggccaGAGUgCCGGCGGUGGCg -3'
miRNA:   3'- -GGCGCUAc---AGG-------------CUCA-GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65286 0.67 0.872991
Target:  5'- gCCGCGgcGUCCagaagcaucgacGAGUUCaGCgaGGCGGCg -3'
miRNA:   3'- -GGCGCuaCAGG------------CUCAGGcCG--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65314 0.72 0.57924
Target:  5'- cCCGCG-UGg-UGGGaCCGGCGGCGGCg -3'
miRNA:   3'- -GGCGCuACagGCUCaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 66734 0.68 0.803727
Target:  5'- cCCGUGccGUCgGAccCCGGCGGCGuCg -3'
miRNA:   3'- -GGCGCuaCAGgCUcaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 67659 0.78 0.304539
Target:  5'- uCgGUGAUGUCgGGGagCGGCGGCGGCg -3'
miRNA:   3'- -GgCGCUACAGgCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 68090 0.69 0.786634
Target:  5'- aCGCGAgcaCCGAGUCgcuaCGGaCGGUGACu -3'
miRNA:   3'- gGCGCUacaGGCUCAG----GCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 68529 0.67 0.879793
Target:  5'- cCCG-GAgg-CCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCgCUacaGGCUCaggCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.