miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 70071 0.71 0.642971
Target:  5'- gCCGCGAUccucaaaggcgcGgaccCCGAGgcgacgagcagcaCCGGCAGCGGCg -3'
miRNA:   3'- -GGCGCUA------------Ca---GGCUCa------------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 71961 0.7 0.694941
Target:  5'- gCCGcCGGUGgagCCGGGcagcCCGGaGGCGACg -3'
miRNA:   3'- -GGC-GCUACa--GGCUCa---GGCCgUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 74640 0.68 0.828305
Target:  5'- aCCGCuacccggGUCUGAgGUCCGGaCcGCGGCg -3'
miRNA:   3'- -GGCGcua----CAGGCU-CAGGCC-GuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 75577 0.66 0.892799
Target:  5'- gCCGUGAcGUUCGuGUcgCCGGCGGgGGg -3'
miRNA:   3'- -GGCGCUaCAGGCuCA--GGCCGUCgCUg -5'
15741 5' -58.5 NC_004065.1 + 78483 0.66 0.892799
Target:  5'- gCCGCGucaagcgcGcCCGAcaccgcccggCCGGCAGCGGCc -3'
miRNA:   3'- -GGCGCua------CaGGCUca--------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 80302 0.73 0.541217
Target:  5'- aCCGCuauGA-GUCCGAGggCCGGC-GCGGCc -3'
miRNA:   3'- -GGCG---CUaCAGGCUCa-GGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 82422 0.69 0.777898
Target:  5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3'
miRNA:   3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 83438 0.7 0.694941
Target:  5'- aCgGCGuUG-CCGGGcUCCGGCAcgaGCGGCa -3'
miRNA:   3'- -GgCGCuACaGGCUC-AGGCCGU---CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 83474 0.67 0.872991
Target:  5'- cCCGCGAcG-CCGAcgauGUCgGGCAGgcCGACc -3'
miRNA:   3'- -GGCGCUaCaGGCU----CAGgCCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 84093 0.68 0.836188
Target:  5'- uCCGCc--GUCCGuuUCUGGUcGCGACa -3'
miRNA:   3'- -GGCGcuaCAGGCucAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 97224 0.66 0.898387
Target:  5'- -gGgGAUGUUCGGggucgcGUCCGGCgcacggcgcuucuGGCGACc -3'
miRNA:   3'- ggCgCUACAGGCU------CAGGCCG-------------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 97931 0.68 0.836188
Target:  5'- gCCGCGc-GUCCGGcaCCGGC-GUGGCa -3'
miRNA:   3'- -GGCGCuaCAGGCUcaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 98126 0.8 0.232653
Target:  5'- gUCGCgGAUGUCCGgagaGGUCUGGCGGUGAUa -3'
miRNA:   3'- -GGCG-CUACAGGC----UCAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 98367 0.66 0.898998
Target:  5'- gCCGCGAUGUUUuuGUCauacuggGGUGGUGGCg -3'
miRNA:   3'- -GGCGCUACAGGcuCAGg------CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 101801 0.67 0.886397
Target:  5'- aUGaUGAUGaCCGAcUUCGGCGGUGGCg -3'
miRNA:   3'- gGC-GCUACaGGCUcAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 102910 0.69 0.795246
Target:  5'- gCCGCGAUGgggGAGaaCUGGaCGGCGACg -3'
miRNA:   3'- -GGCGCUACaggCUCa-GGCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 104000 0.67 0.865997
Target:  5'- cCUGCGGcaaGaCUGAGUCUGGCGaCGACa -3'
miRNA:   3'- -GGCGCUa--CaGGCUCAGGCCGUcGCUG- -5'
15741 5' -58.5 NC_004065.1 + 105543 0.67 0.879793
Target:  5'- uCCGCGcgGcCCuGGacCCGGCgcAGCGGCa -3'
miRNA:   3'- -GGCGCuaCaGGcUCa-GGCCG--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 116307 0.71 0.67579
Target:  5'- uCCGaGGUGUCgGcGUCggcggCGGCAGCGGCg -3'
miRNA:   3'- -GGCgCUACAGgCuCAG-----GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119319 0.68 0.820263
Target:  5'- aCuCGg---CCGAGUCgCGGCGGCGGCu -3'
miRNA:   3'- gGcGCuacaGGCUCAG-GCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.