miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 164350 0.75 0.465413
Target:  5'- gCGCGAUGUCCucgGGcGUCggaucuuccugcggCGGCAGCGGCa -3'
miRNA:   3'- gGCGCUACAGG---CU-CAG--------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 163432 0.69 0.769044
Target:  5'- gCCGCGGUGgCCGccgCCGuGCAGuCGGCc -3'
miRNA:   3'- -GGCGCUACaGGCucaGGC-CGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 163419 0.67 0.851448
Target:  5'- cCCGCGGcuccggauccUGUCCGcGUCCaucguGCGGCaGGCg -3'
miRNA:   3'- -GGCGCU----------ACAGGCuCAGGc----CGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 162657 0.66 0.892799
Target:  5'- aCGcCGAccGUCaCGAuGUguacaCCGGCAGCGGCu -3'
miRNA:   3'- gGC-GCUa-CAG-GCU-CA-----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 162041 0.68 0.843904
Target:  5'- cCCGCaguacaugGUCCauuccugcggGGGUuucaCCGGCAGCGACu -3'
miRNA:   3'- -GGCGcua-----CAGG----------CUCA----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 161278 1.1 0.002784
Target:  5'- gCCGCGAUGUCCGAGUCCGGCAGCGACc -3'
miRNA:   3'- -GGCGCUACAGGCUCAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 160581 0.68 0.803727
Target:  5'- uCUGCGAcacgaUGUCCgucGAGUCCaGCAGguCGGCg -3'
miRNA:   3'- -GGCGCU-----ACAGG---CUCAGGcCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 160556 0.66 0.904989
Target:  5'- gCCGCGua--CCGcAG-CCGGC-GCGACa -3'
miRNA:   3'- -GGCGCuacaGGC-UCaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 159804 0.66 0.89716
Target:  5'- gCGCGAUcgucagcaggucucGuUCCGucUCCGGCAGCaGCa -3'
miRNA:   3'- gGCGCUA--------------C-AGGCucAGGCCGUCGcUG- -5'
15741 5' -58.5 NC_004065.1 + 155378 0.67 0.875735
Target:  5'- gCCGCGGUccggaccucagacCCGGGUagCGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUAca-----------GGCUCAg-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 155139 0.7 0.694941
Target:  5'- cCCGCGA-GUaCGAGgUCGGCuGCGACc -3'
miRNA:   3'- -GGCGCUaCAgGCUCaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 153225 0.66 0.909058
Target:  5'- aCgGCGAUGaaCGGugauagcguucgccGUCgCGGCGGCGAUg -3'
miRNA:   3'- -GgCGCUACagGCU--------------CAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 151513 0.67 0.872991
Target:  5'- -aGCGGUGuUCUGAGgccgcugCCGGCcgGGCGGu -3'
miRNA:   3'- ggCGCUAC-AGGCUCa------GGCCG--UCGCUg -5'
15741 5' -58.5 NC_004065.1 + 150889 0.66 0.898998
Target:  5'- uCCaGCGAcgaGUCCGucgggaacaaggGGUCCGaCGGCGGCu -3'
miRNA:   3'- -GG-CGCUa--CAGGC------------UCAGGCcGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 150405 0.67 0.886397
Target:  5'- cCCGCagcGUCCGcgcgcgcagcgGGUCCGGCcuguccaacaGGUGACa -3'
miRNA:   3'- -GGCGcuaCAGGC-----------UCAGGCCG----------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148858 0.7 0.732616
Target:  5'- gCCGCGA---UCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCGCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148803 0.67 0.886397
Target:  5'- aCGaCGAccggcaGUCCGAGUCCGcGCGGUa-- -3'
miRNA:   3'- gGC-GCUa-----CAGGCUCAGGC-CGUCGcug -5'
15741 5' -58.5 NC_004065.1 + 148623 0.66 0.892799
Target:  5'- uCCaGCGucUGUCUGGacagCGGCAGCGACu -3'
miRNA:   3'- -GG-CGCu-ACAGGCUcag-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 146048 0.68 0.812068
Target:  5'- aUCGCGAUGUCCGAGUgUGucaaGGuCGAUc -3'
miRNA:   3'- -GGCGCUACAGGCUCAgGCcg--UC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 144362 0.74 0.522514
Target:  5'- aCGCGAUGU-CGAcGgcgCUGGCGGUGACg -3'
miRNA:   3'- gGCGCUACAgGCU-Ca--GGCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.