miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 143118 0.66 0.91634
Target:  5'- gCGCGccG-CCGAGggcgagaCCGGCGccGCGACc -3'
miRNA:   3'- gGCGCuaCaGGCUCa------GGCCGU--CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 142329 0.77 0.332025
Target:  5'- aCCGCGAgGUCuCGAacgCCGGCGGCGAg -3'
miRNA:   3'- -GGCGCUaCAG-GCUca-GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 141719 0.66 0.91634
Target:  5'- gCGCGAcGaggCCGAGgacgugaacgCCGGCcucaucaacGGCGACg -3'
miRNA:   3'- gGCGCUaCa--GGCUCa---------GGCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 140679 0.68 0.843904
Target:  5'- cCUGCGGccUGUCgugccuCGAGuUCUGGCAGCG-Cg -3'
miRNA:   3'- -GGCGCU--ACAG------GCUC-AGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 139901 0.7 0.704449
Target:  5'- gCCGCGggGccUCCG-G-CCGGCGGCGcCa -3'
miRNA:   3'- -GGCGCuaC--AGGCuCaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 139582 0.72 0.607163
Target:  5'- aCCGC-AUGUCCaucuacucgaccgGGGUCaCGaGCGGCGACa -3'
miRNA:   3'- -GGCGcUACAGG-------------CUCAG-GC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 136668 0.7 0.74186
Target:  5'- -aGCGAcGggCGGGUCUGGCcGGCGGCg -3'
miRNA:   3'- ggCGCUaCagGCUCAGGCCG-UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 136614 0.7 0.740939
Target:  5'- gUGCGGggcgcugGUCCGAggcggcgGUCCGG-AGCGGCg -3'
miRNA:   3'- gGCGCUa------CAGGCU-------CAGGCCgUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 133507 0.66 0.892799
Target:  5'- uCCGCuacgGUCCGAGUC-GGUcgccgagauGGUGACg -3'
miRNA:   3'- -GGCGcua-CAGGCUCAGgCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 131222 0.7 0.712961
Target:  5'- gCCGCagaagucGAUGUCgGGGUCuCGGUcgucuccguGGCGGCg -3'
miRNA:   3'- -GGCG-------CUACAGgCUCAG-GCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 130629 0.66 0.910201
Target:  5'- gCUGCGAgcgcaccUGUCgcuCGAGUCgGGaCAGuCGGCg -3'
miRNA:   3'- -GGCGCU-------ACAG---GCUCAGgCC-GUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 130014 0.67 0.865997
Target:  5'- -gGCGAUG-CUGua--CGGCGGCGGCg -3'
miRNA:   3'- ggCGCUACaGGCucagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 129565 0.67 0.885745
Target:  5'- gCCGaugcCGGUGuUCCGGGUggagaugCCGGagaAGCGGCa -3'
miRNA:   3'- -GGC----GCUAC-AGGCUCA-------GGCCg--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 128732 0.7 0.704449
Target:  5'- -gGCGGcUGgccCCGAGgcagccgUCGGCAGCGGCa -3'
miRNA:   3'- ggCGCU-ACa--GGCUCa------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 128548 0.67 0.872991
Target:  5'- -aGUGGUGUggCUGuGUCugcgcccgcagCGGCAGCGACg -3'
miRNA:   3'- ggCGCUACA--GGCuCAG-----------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 128400 0.7 0.713903
Target:  5'- gCUGUGggGgCCGAG--CGGCAGCGGCg -3'
miRNA:   3'- -GGCGCuaCaGGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 127108 0.66 0.91634
Target:  5'- uCCGuCGccGUCC-AGUUcucccccaucgCGGCGGCGGCg -3'
miRNA:   3'- -GGC-GCuaCAGGcUCAG-----------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 123001 0.71 0.666163
Target:  5'- aCGCGAUcgacGUCCGGGUaUUGGCGGCcACg -3'
miRNA:   3'- gGCGCUA----CAGGCUCA-GGCCGUCGcUG- -5'
15741 5' -58.5 NC_004065.1 + 121120 0.69 0.786634
Target:  5'- aCGUaGAUGUCCGAGUgCGaGCAGgagagGACg -3'
miRNA:   3'- gGCG-CUACAGGCUCAgGC-CGUCg----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.