Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 5' | -58.5 | NC_004065.1 | + | 173441 | 0.69 | 0.777898 |
Target: 5'- -gGUGAcGUUCGAcGUaCCGGUGGCGGCg -3' miRNA: 3'- ggCGCUaCAGGCU-CA-GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 163432 | 0.69 | 0.769044 |
Target: 5'- gCCGCGGUGgCCGccgCCGuGCAGuCGGCc -3' miRNA: 3'- -GGCGCUACaGGCucaGGC-CGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 204629 | 0.72 | 0.62748 |
Target: 5'- uUCG-GAccgCCGAGUuuGGCAGCGGCu -3' miRNA: 3'- -GGCgCUacaGGCUCAggCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 35599 | 0.72 | 0.588843 |
Target: 5'- uCgGCGGUGUCggugCGGGaUCCacGGCGGCGGCg -3' miRNA: 3'- -GgCGCUACAG----GCUC-AGG--CCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 18049 | 0.73 | 0.554442 |
Target: 5'- gCGCGAgg-UCGAGUCugaucucgacgauggCGGCAGCGACc -3' miRNA: 3'- gGCGCUacaGGCUCAG---------------GCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 33289 | 0.73 | 0.531836 |
Target: 5'- aCGcCGAUGUUgGGGUa-GGCGGCGACg -3' miRNA: 3'- gGC-GCUACAGgCUCAggCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 44525 | 0.76 | 0.416673 |
Target: 5'- gCGCGAUGUuaCCGGGgaCGGUGGCGGCg -3' miRNA: 3'- gGCGCUACA--GGCUCagGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 164548 | 0.76 | 0.416673 |
Target: 5'- cUCGCuGUGU-CGAG-CCGGCGGCGGCg -3' miRNA: 3'- -GGCGcUACAgGCUCaGGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 142329 | 0.77 | 0.332025 |
Target: 5'- aCCGCGAgGUCuCGAacgCCGGCGGCGAg -3' miRNA: 3'- -GGCGCUaCAG-GCUca-GGCCGUCGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 67659 | 0.78 | 0.304539 |
Target: 5'- uCgGUGAUGUCgGGGagCGGCGGCGGCg -3' miRNA: 3'- -GgCGCUACAGgCUCagGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 228467 | 0.71 | 0.637163 |
Target: 5'- aCCGCGuUGcucaUCgCGAGUCCGGCGucGCGGg -3' miRNA: 3'- -GGCGCuAC----AG-GCUCAGGCCGU--CGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 70071 | 0.71 | 0.642971 |
Target: 5'- gCCGCGAUccucaaaggcgcGgaccCCGAGgcgacgagcagcaCCGGCAGCGGCg -3' miRNA: 3'- -GGCGCUA------------Ca---GGCUCa------------GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 168225 | 0.69 | 0.751018 |
Target: 5'- -aGCGccGUCCGAG-CUGGUAGaUGACg -3' miRNA: 3'- ggCGCuaCAGGCUCaGGCCGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 128400 | 0.7 | 0.713903 |
Target: 5'- gCUGUGggGgCCGAG--CGGCAGCGGCg -3' miRNA: 3'- -GGCGCuaCaGGCUCagGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 131222 | 0.7 | 0.712961 |
Target: 5'- gCCGCagaagucGAUGUCgGGGUCuCGGUcgucuccguGGCGGCg -3' miRNA: 3'- -GGCG-------CUACAGgCUCAG-GCCG---------UCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 128732 | 0.7 | 0.704449 |
Target: 5'- -gGCGGcUGgccCCGAGgcagccgUCGGCAGCGGCa -3' miRNA: 3'- ggCGCU-ACa--GGCUCa------GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 24844 | 0.7 | 0.694941 |
Target: 5'- aCGCGgcGcCCGAugUUGGCGGCGACg -3' miRNA: 3'- gGCGCuaCaGGCUcaGGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 71961 | 0.7 | 0.694941 |
Target: 5'- gCCGcCGGUGgagCCGGGcagcCCGGaGGCGACg -3' miRNA: 3'- -GGC-GCUACa--GGCUCa---GGCCgUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 30588 | 0.71 | 0.656511 |
Target: 5'- gCCGCGGcgagcgccucGUCCGcGUUCcgaGGCAGCGACg -3' miRNA: 3'- -GGCGCUa---------CAGGCuCAGG---CCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 168637 | 0.71 | 0.646842 |
Target: 5'- gCCGCGGg--CgGAG-CCGGCgcGGCGACg -3' miRNA: 3'- -GGCGCUacaGgCUCaGGCCG--UCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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