miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 98126 0.8 0.232653
Target:  5'- gUCGCgGAUGUCCGgagaGGUCUGGCGGUGAUa -3'
miRNA:   3'- -GGCG-CUACAGGC----UCAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 30588 0.71 0.656511
Target:  5'- gCCGCGGcgagcgccucGUCCGcGUUCcgaGGCAGCGACg -3'
miRNA:   3'- -GGCGCUa---------CAGGCuCAGG---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 71961 0.7 0.694941
Target:  5'- gCCGcCGGUGgagCCGGGcagcCCGGaGGCGACg -3'
miRNA:   3'- -GGC-GCUACa--GGCUCa---GGCCgUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 10951 0.68 0.812068
Target:  5'- gCGCGaAUGUCCGGuGUCUGGUgcguaauaauAGCGcCa -3'
miRNA:   3'- gGCGC-UACAGGCU-CAGGCCG----------UCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 120527 0.68 0.803727
Target:  5'- cUCGaCGAUGUCgaGGGUcuccggugugCCGGCGGCGGu -3'
miRNA:   3'- -GGC-GCUACAGg-CUCA----------GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 194295 0.69 0.798655
Target:  5'- aCCGCGAucUGgcgCCGAGUCgccagCGGUAccagucuuccaggucGCGACg -3'
miRNA:   3'- -GGCGCU--ACa--GGCUCAG-----GCCGU---------------CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 221744 0.69 0.795246
Target:  5'- aCCGCGGccccgaucaGUCCGAugagcagaaagGUCaCGGCcGCGACg -3'
miRNA:   3'- -GGCGCUa--------CAGGCU-----------CAG-GCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 121120 0.69 0.786634
Target:  5'- aCGUaGAUGUCCGAGUgCGaGCAGgagagGACg -3'
miRNA:   3'- gGCG-CUACAGGCUCAgGC-CGUCg----CUG- -5'
15741 5' -58.5 NC_004065.1 + 173441 0.69 0.777898
Target:  5'- -gGUGAcGUUCGAcGUaCCGGUGGCGGCg -3'
miRNA:   3'- ggCGCUaCAGGCU-CA-GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 163432 0.69 0.769044
Target:  5'- gCCGCGGUGgCCGccgCCGuGCAGuCGGCc -3'
miRNA:   3'- -GGCGCUACaGGCucaGGC-CGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 168225 0.69 0.751018
Target:  5'- -aGCGccGUCCGAG-CUGGUAGaUGACg -3'
miRNA:   3'- ggCGCuaCAGGCUCaGGCCGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 128400 0.7 0.713903
Target:  5'- gCUGUGggGgCCGAG--CGGCAGCGGCg -3'
miRNA:   3'- -GGCGCuaCaGGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 131222 0.7 0.712961
Target:  5'- gCCGCagaagucGAUGUCgGGGUCuCGGUcgucuccguGGCGGCg -3'
miRNA:   3'- -GGCG-------CUACAGgCUCAG-GCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 128732 0.7 0.704449
Target:  5'- -gGCGGcUGgccCCGAGgcagccgUCGGCAGCGGCa -3'
miRNA:   3'- ggCGCU-ACa--GGCUCa------GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 24844 0.7 0.694941
Target:  5'- aCGCGgcGcCCGAugUUGGCGGCGACg -3'
miRNA:   3'- gGCGCuaCaGGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 4661 0.74 0.494947
Target:  5'- gCCGCGGgcGUCCaGAGacagaggacUCCGGCGGCgGACa -3'
miRNA:   3'- -GGCGCUa-CAGG-CUC---------AGGCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 207990 0.74 0.492226
Target:  5'- aCCGCGGccugcccggggccgUGgCCGGGUuagugCCGGCGGCGAUg -3'
miRNA:   3'- -GGCGCU--------------ACaGGCUCA-----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 164350 0.75 0.465413
Target:  5'- gCGCGAUGUCCucgGGcGUCggaucuuccugcggCGGCAGCGGCa -3'
miRNA:   3'- gGCGCUACAGG---CU-CAG--------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 185192 0.75 0.459266
Target:  5'- cCCGUGucgcUGUCCGuGUCgCGGUGGUGGCg -3'
miRNA:   3'- -GGCGCu---ACAGGCuCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119661 0.66 0.91634
Target:  5'- gCGCGAgagGUCCcAG-CCGcuGCGGUGGCu -3'
miRNA:   3'- gGCGCUa--CAGGcUCaGGC--CGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.