miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 191895 0.7 0.723295
Target:  5'- aUGCGcacgCCGaAGUCCGGC-GCGACg -3'
miRNA:   3'- gGCGCuacaGGC-UCAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148858 0.7 0.732616
Target:  5'- gCCGCGA---UCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCGCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 136614 0.7 0.740939
Target:  5'- gUGCGGggcgcugGUCCGAggcggcgGUCCGG-AGCGGCg -3'
miRNA:   3'- gGCGCUa------CAGGCU-------CAGGCCgUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 136668 0.7 0.74186
Target:  5'- -aGCGAcGggCGGGUCUGGCcGGCGGCg -3'
miRNA:   3'- ggCGCUaCagGCUCAGGCCG-UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 82422 0.69 0.777898
Target:  5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3'
miRNA:   3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 178198 0.69 0.786634
Target:  5'- aCGCGAUGgaucggGAGUCCgccauccgGGCGGCGAa -3'
miRNA:   3'- gGCGCUACagg---CUCAGG--------CCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 116307 0.71 0.67579
Target:  5'- uCCGaGGUGUCgGcGUCggcggCGGCAGCGGCg -3'
miRNA:   3'- -GGCgCUACAGgCuCAG-----GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 123001 0.71 0.666163
Target:  5'- aCGCGAUcgacGUCCGGGUaUUGGCGGCcACg -3'
miRNA:   3'- gGCGCUA----CAGGCUCA-GGCCGUCGcUG- -5'
15741 5' -58.5 NC_004065.1 + 204003 0.72 0.608129
Target:  5'- gCCGCuGGUGgacgacgCCGAGgccaCGGuCAGCGACg -3'
miRNA:   3'- -GGCG-CUACa------GGCUCag--GCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119661 0.66 0.91634
Target:  5'- gCGCGAgagGUCCcAG-CCGcuGCGGUGGCu -3'
miRNA:   3'- gGCGCUa--CAGGcUCaGGC--CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 185192 0.75 0.459266
Target:  5'- cCCGUGucgcUGUCCGuGUCgCGGUGGUGGCg -3'
miRNA:   3'- -GGCGCu---ACAGGCuCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 164350 0.75 0.465413
Target:  5'- gCGCGAUGUCCucgGGcGUCggaucuuccugcggCGGCAGCGGCa -3'
miRNA:   3'- gGCGCUACAGG---CU-CAG--------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 207990 0.74 0.492226
Target:  5'- aCCGCGGccugcccggggccgUGgCCGGGUuagugCCGGCGGCGAUg -3'
miRNA:   3'- -GGCGCU--------------ACaGGCUCA-----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 4661 0.74 0.494947
Target:  5'- gCCGCGGgcGUCCaGAGacagaggacUCCGGCGGCgGACa -3'
miRNA:   3'- -GGCGCUa-CAGG-CUC---------AGGCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 56111 0.74 0.513256
Target:  5'- gCGCGGUGUauaggaucuaCCGAGUguugaGGCGGCGGCg -3'
miRNA:   3'- gGCGCUACA----------GGCUCAgg---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 144362 0.74 0.522514
Target:  5'- aCGCGAUGU-CGAcGgcgCUGGCGGUGACg -3'
miRNA:   3'- gGCGCUACAgGCU-Ca--GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 80302 0.73 0.541217
Target:  5'- aCCGCuauGA-GUCCGAGggCCGGC-GCGGCc -3'
miRNA:   3'- -GGCG---CUaCAGGCUCa-GGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65314 0.72 0.57924
Target:  5'- cCCGCG-UGg-UGGGaCCGGCGGCGGCg -3'
miRNA:   3'- -GGCGCuACagGCUCaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 29592 0.72 0.588843
Target:  5'- gCCGCGGUGaCCGcGGUCCuGCAG-GACu -3'
miRNA:   3'- -GGCGCUACaGGC-UCAGGcCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 139582 0.72 0.607163
Target:  5'- aCCGC-AUGUCCaucuacucgaccgGGGUCaCGaGCGGCGACa -3'
miRNA:   3'- -GGCGcUACAGG-------------CUCAG-GC-CGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.