miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 136668 0.7 0.74186
Target:  5'- -aGCGAcGggCGGGUCUGGCcGGCGGCg -3'
miRNA:   3'- ggCGCUaCagGCUCAGGCCG-UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 191895 0.7 0.723295
Target:  5'- aUGCGcacgCCGaAGUCCGGC-GCGACg -3'
miRNA:   3'- gGCGCuacaGGC-UCAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 139582 0.72 0.607163
Target:  5'- aCCGC-AUGUCCaucuacucgaccgGGGUCaCGaGCGGCGACa -3'
miRNA:   3'- -GGCGcUACAGG-------------CUCAG-GC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 207990 0.74 0.492226
Target:  5'- aCCGCGGccugcccggggccgUGgCCGGGUuagugCCGGCGGCGAUg -3'
miRNA:   3'- -GGCGCU--------------ACaGGCUCA-----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119319 0.68 0.820263
Target:  5'- aCuCGg---CCGAGUCgCGGCGGCGGCu -3'
miRNA:   3'- gGcGCuacaGGCUCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 160581 0.68 0.803727
Target:  5'- uCUGCGAcacgaUGUCCgucGAGUCCaGCAGguCGGCg -3'
miRNA:   3'- -GGCGCU-----ACAGG---CUCAGGcCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 30023 0.7 0.704449
Target:  5'- aCCGCGGUGcCCGucaagCUGGUGGCGGa -3'
miRNA:   3'- -GGCGCUACaGGCuca--GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 164350 0.75 0.465413
Target:  5'- gCGCGAUGUCCucgGGcGUCggaucuuccugcggCGGCAGCGGCa -3'
miRNA:   3'- gGCGCUACAGG---CU-CAG--------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 102910 0.69 0.795246
Target:  5'- gCCGCGAUGgggGAGaaCUGGaCGGCGACg -3'
miRNA:   3'- -GGCGCUACaggCUCa-GGCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 185192 0.75 0.459266
Target:  5'- cCCGUGucgcUGUCCGuGUCgCGGUGGUGGCg -3'
miRNA:   3'- -GGCGCu---ACAGGCuCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 139901 0.7 0.704449
Target:  5'- gCCGCGggGccUCCG-G-CCGGCGGCGcCa -3'
miRNA:   3'- -GGCGCuaC--AGGCuCaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 82422 0.69 0.777898
Target:  5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3'
miRNA:   3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 59720 0.71 0.685385
Target:  5'- gCUGcCGAUGUuuaCCGAc-CCGGCGGCGAUg -3'
miRNA:   3'- -GGC-GCUACA---GGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 204003 0.72 0.608129
Target:  5'- gCCGCuGGUGgacgacgCCGAGgccaCGGuCAGCGACg -3'
miRNA:   3'- -GGCG-CUACa------GGCUCag--GCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 80302 0.73 0.541217
Target:  5'- aCCGCuauGA-GUCCGAGggCCGGC-GCGGCc -3'
miRNA:   3'- -GGCG---CUaCAGGCUCa-GGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 4661 0.74 0.494947
Target:  5'- gCCGCGGgcGUCCaGAGacagaggacUCCGGCGGCgGACa -3'
miRNA:   3'- -GGCGCUa-CAGG-CUC---------AGGCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 162041 0.68 0.843904
Target:  5'- cCCGCaguacaugGUCCauuccugcggGGGUuucaCCGGCAGCGACu -3'
miRNA:   3'- -GGCGcua-----CAGG----------CUCA----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 194077 0.68 0.812068
Target:  5'- gCGCGA-GUCCGAcgaccUgCGGCcGCGACa -3'
miRNA:   3'- gGCGCUaCAGGCUc----AgGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 66734 0.68 0.803727
Target:  5'- cCCGUGccGUCgGAccCCGGCGGCGuCg -3'
miRNA:   3'- -GGCGCuaCAGgCUcaGGCCGUCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.