miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 202592 0.67 0.851448
Target:  5'- aCGCGGUGggaCGGGcagaggCUGGguGCGAUg -3'
miRNA:   3'- gGCGCUACag-GCUCa-----GGCCguCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 82422 0.69 0.777898
Target:  5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3'
miRNA:   3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5'
15741 5' -58.5 NC_004065.1 + 65314 0.72 0.57924
Target:  5'- cCCGCG-UGg-UGGGaCCGGCGGCGGCg -3'
miRNA:   3'- -GGCGCuACagGCUCaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 162041 0.68 0.843904
Target:  5'- cCCGCaguacaugGUCCauuccugcggGGGUuucaCCGGCAGCGACu -3'
miRNA:   3'- -GGCGcua-----CAGG----------CUCA----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 80302 0.73 0.541217
Target:  5'- aCCGCuauGA-GUCCGAGggCCGGC-GCGGCc -3'
miRNA:   3'- -GGCG---CUaCAGGCUCa-GGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 130629 0.66 0.910201
Target:  5'- gCUGCGAgcgcaccUGUCgcuCGAGUCgGGaCAGuCGGCg -3'
miRNA:   3'- -GGCGCU-------ACAG---GCUCAGgCC-GUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 139582 0.72 0.607163
Target:  5'- aCCGC-AUGUCCaucuacucgaccgGGGUCaCGaGCGGCGACa -3'
miRNA:   3'- -GGCGcUACAGG-------------CUCAG-GC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 153225 0.66 0.909058
Target:  5'- aCgGCGAUGaaCGGugauagcguucgccGUCgCGGCGGCGAUg -3'
miRNA:   3'- -GgCGCUACagGCU--------------CAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 160556 0.66 0.904989
Target:  5'- gCCGCGua--CCGcAG-CCGGC-GCGACa -3'
miRNA:   3'- -GGCGCuacaGGC-UCaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 129565 0.67 0.885745
Target:  5'- gCCGaugcCGGUGuUCCGGGUggagaugCCGGagaAGCGGCa -3'
miRNA:   3'- -GGC----GCUAC-AGGCUCA-------GGCCg--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 155378 0.67 0.875735
Target:  5'- gCCGCGGUccggaccucagacCCGGGUagCGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUAca-----------GGCUCAg-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 188981 0.67 0.865997
Target:  5'- gCCGCGcgGcCCGAGcUCugCGGCuuCGACg -3'
miRNA:   3'- -GGCGCuaCaGGCUC-AG--GCCGucGCUG- -5'
15741 5' -58.5 NC_004065.1 + 186100 0.67 0.851448
Target:  5'- uCCGUGAUGU--GuuUCUGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUACAggCucAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168834 0.68 0.815364
Target:  5'- gCCGCGGguccUGgccuacgCCGGGUUCGGCGGUuccaacccgaucuucGACg -3'
miRNA:   3'- -GGCGCU----ACa------GGCUCAGGCCGUCG---------------CUG- -5'
15741 5' -58.5 NC_004065.1 + 66734 0.68 0.803727
Target:  5'- cCCGUGccGUCgGAccCCGGCGGCGuCg -3'
miRNA:   3'- -GGCGCuaCAGgCUcaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 68090 0.69 0.786634
Target:  5'- aCGCGAgcaCCGAGUCgcuaCGGaCGGUGACu -3'
miRNA:   3'- gGCGCUacaGGCUCAG----GCC-GUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148858 0.7 0.732616
Target:  5'- gCCGCGA---UCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCGCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 30023 0.7 0.704449
Target:  5'- aCCGCGGUGcCCGucaagCUGGUGGCGGa -3'
miRNA:   3'- -GGCGCUACaGGCuca--GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 116307 0.71 0.67579
Target:  5'- uCCGaGGUGUCgGcGUCggcggCGGCAGCGGCg -3'
miRNA:   3'- -GGCgCUACAGgCuCAG-----GCCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.