miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119319 0.68 0.820263
Target:  5'- aCuCGg---CCGAGUCgCGGCGGCGGCu -3'
miRNA:   3'- gGcGCuacaGGCUCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168834 0.68 0.815364
Target:  5'- gCCGCGGguccUGgccuacgCCGGGUUCGGCGGUuccaacccgaucuucGACg -3'
miRNA:   3'- -GGCGCU----ACa------GGCUCAGGCCGUCG---------------CUG- -5'
15741 5' -58.5 NC_004065.1 + 194077 0.68 0.812068
Target:  5'- gCGCGA-GUCCGAcgaccUgCGGCcGCGACa -3'
miRNA:   3'- gGCGCUaCAGGCUc----AgGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119661 0.66 0.91634
Target:  5'- gCGCGAgagGUCCcAG-CCGcuGCGGUGGCu -3'
miRNA:   3'- gGCGCUa--CAGGcUCaGGC--CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 186100 0.67 0.851448
Target:  5'- uCCGUGAUGU--GuuUCUGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUACAggCucAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65196 0.68 0.81945
Target:  5'- aUCGCGGUuuccUCCucggaaacggccaGAGUgCCGGCGGUGGCg -3'
miRNA:   3'- -GGCGCUAc---AGG-------------CUCA-GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 24844 0.7 0.694941
Target:  5'- aCGCGgcGcCCGAugUUGGCGGCGACg -3'
miRNA:   3'- gGCGCuaCaGGCUcaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 10951 0.68 0.812068
Target:  5'- gCGCGaAUGUCCGGuGUCUGGUgcguaauaauAGCGcCa -3'
miRNA:   3'- gGCGC-UACAGGCU-CAGGCCG----------UCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 56251 0.66 0.91634
Target:  5'- gCCG-GAUGUCC----CUGGCGGCGAUc -3'
miRNA:   3'- -GGCgCUACAGGcucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 143118 0.66 0.91634
Target:  5'- gCGCGccG-CCGAGggcgagaCCGGCGccGCGACc -3'
miRNA:   3'- gGCGCuaCaGGCUCa------GGCCGU--CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 150889 0.66 0.898998
Target:  5'- uCCaGCGAcgaGUCCGucgggaacaaggGGUCCGaCGGCGGCu -3'
miRNA:   3'- -GG-CGCUa--CAGGC------------UCAGGCcGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 18049 0.73 0.554442
Target:  5'- gCGCGAgg-UCGAGUCugaucucgacgauggCGGCAGCGACc -3'
miRNA:   3'- gGCGCUacaGGCUCAG---------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 1119 0.68 0.836188
Target:  5'- cCCGUGGUGUCUG---UCGGCuGCGAg -3'
miRNA:   3'- -GGCGCUACAGGCucaGGCCGuCGCUg -5'
15741 5' -58.5 NC_004065.1 + 127108 0.66 0.91634
Target:  5'- uCCGuCGccGUCC-AGUUcucccccaucgCGGCGGCGGCg -3'
miRNA:   3'- -GGC-GCuaCAGGcUCAG-----------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 84093 0.68 0.836188
Target:  5'- uCCGCc--GUCCGuuUCUGGUcGCGACa -3'
miRNA:   3'- -GGCGcuaCAGGCucAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 74640 0.68 0.828305
Target:  5'- aCCGCuacccggGUCUGAgGUCCGGaCcGCGGCg -3'
miRNA:   3'- -GGCGcua----CAGGCU-CAGGCC-GuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59157 0.68 0.828305
Target:  5'- aCgGCGAgaGUCCGA-UCgGGCGcGCGGCg -3'
miRNA:   3'- -GgCGCUa-CAGGCUcAGgCCGU-CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 30588 0.71 0.656511
Target:  5'- gCCGCGGcgagcgccucGUCCGcGUUCcgaGGCAGCGACg -3'
miRNA:   3'- -GGCGCUa---------CAGGCuCAGG---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 71961 0.7 0.694941
Target:  5'- gCCGcCGGUGgagCCGGGcagcCCGGaGGCGACg -3'
miRNA:   3'- -GGC-GCUACa--GGCUCa---GGCCgUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.