miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 3' -54.7 NC_004065.1 + 63154 0.66 0.978953
Target:  5'- cACCGUCGaACAcaagugccGCGAggccCUG-GCGAGCUg -3'
miRNA:   3'- -UGGCAGC-UGU--------CGCU----GACaCGCUUGAg -5'
15742 3' -54.7 NC_004065.1 + 26514 0.66 0.978953
Target:  5'- gACaCGUCGACGGgGAagccuUUGUGgGAuACUCc -3'
miRNA:   3'- -UG-GCAGCUGUCgCU-----GACACgCU-UGAG- -5'
15742 3' -54.7 NC_004065.1 + 173875 0.66 0.978953
Target:  5'- cGCCGUC-ACGcCGugUGUGUGGGC-Cg -3'
miRNA:   3'- -UGGCAGcUGUcGCugACACGCUUGaG- -5'
15742 3' -54.7 NC_004065.1 + 47395 0.66 0.978953
Target:  5'- cGCCGUCGGCacgagAGCGAa-GUGUGAGg-- -3'
miRNA:   3'- -UGGCAGCUG-----UCGCUgaCACGCUUgag -5'
15742 3' -54.7 NC_004065.1 + 27932 0.66 0.978953
Target:  5'- cGCCGcCGACAGaGACgcaGUGCGcACa- -3'
miRNA:   3'- -UGGCaGCUGUCgCUGa--CACGCuUGag -5'
15742 3' -54.7 NC_004065.1 + 191530 0.66 0.978953
Target:  5'- uCCGgUGACAGCGACg--GCGugUUCg -3'
miRNA:   3'- uGGCaGCUGUCGCUGacaCGCuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 26947 0.66 0.978953
Target:  5'- gACCGcucCGGCGGCcGCg--GCGGGCUCc -3'
miRNA:   3'- -UGGCa--GCUGUCGcUGacaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 206780 0.66 0.976647
Target:  5'- cGCCGUUGGCGGaggGAggGUGUcgGGACUCu -3'
miRNA:   3'- -UGGCAGCUGUCg--CUgaCACG--CUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 169853 0.66 0.976647
Target:  5'- aACCG-CGACggguucGGgGACgGUGaCGGGCUCg -3'
miRNA:   3'- -UGGCaGCUG------UCgCUGaCAC-GCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 204636 0.66 0.976647
Target:  5'- cGCCGaguUUGGCAGCGGCUuUGUaGACUUu -3'
miRNA:   3'- -UGGC---AGCUGUCGCUGAcACGcUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 35596 0.66 0.976647
Target:  5'- -gCGUCGGCGGUGuCgGUGCGGGaUCc -3'
miRNA:   3'- ugGCAGCUGUCGCuGaCACGCUUgAG- -5'
15742 3' -54.7 NC_004065.1 + 48111 0.66 0.97416
Target:  5'- gGCgGU-GGCGGCGGCgGUGgGAcCUCg -3'
miRNA:   3'- -UGgCAgCUGUCGCUGaCACgCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 138860 0.66 0.97416
Target:  5'- gGCCGUCGcCuGCGACgauccGUGgGucCUCg -3'
miRNA:   3'- -UGGCAGCuGuCGCUGa----CACgCuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 106266 0.66 0.971487
Target:  5'- gACCGgCGcGCGGCGcACcgagGUGCuGGACUCg -3'
miRNA:   3'- -UGGCaGC-UGUCGC-UGa---CACG-CUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 208036 0.66 0.971487
Target:  5'- gACCGUCGGC-GUGGCcGUgGCGGccCUCa -3'
miRNA:   3'- -UGGCAGCUGuCGCUGaCA-CGCUu-GAG- -5'
15742 3' -54.7 NC_004065.1 + 57533 0.66 0.971487
Target:  5'- cACCGUCcGguGCGAg-GUGCccGAGCUCu -3'
miRNA:   3'- -UGGCAGcUguCGCUgaCACG--CUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 153249 0.66 0.971487
Target:  5'- cGCCGUCG-CGGCGGCgaUGCGccgGACg- -3'
miRNA:   3'- -UGGCAGCuGUCGCUGacACGC---UUGag -5'
15742 3' -54.7 NC_004065.1 + 99094 0.66 0.971209
Target:  5'- uGCCGUCGACcaacaagAGUcucuucCUGgcgGCGAGCUCc -3'
miRNA:   3'- -UGGCAGCUG-------UCGcu----GACa--CGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 163721 0.66 0.971209
Target:  5'- cGCCG-CGaucuuccGCAGCGugUccGUGAACUCg -3'
miRNA:   3'- -UGGCaGC-------UGUCGCugAcaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 112855 0.66 0.96862
Target:  5'- uGCCGUCgGACAGCaGCUcGUccgGCaGACUCa -3'
miRNA:   3'- -UGGCAG-CUGUCGcUGA-CA---CGcUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.