miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 3' -54.7 NC_004065.1 + 160830 1.08 0.006648
Target:  5'- cACCGUCGACAGCGACUGUGCGAACUCc -3'
miRNA:   3'- -UGGCAGCUGUCGCUGACACGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 117826 0.77 0.518198
Target:  5'- cGCCGUCGAgGGCGACaccaGCGggUUCa -3'
miRNA:   3'- -UGGCAGCUgUCGCUGaca-CGCuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 97028 0.76 0.567003
Target:  5'- uACUGUCGugGGUG-CUgcgcGUGCGAGCUCu -3'
miRNA:   3'- -UGGCAGCugUCGCuGA----CACGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 59719 0.75 0.626933
Target:  5'- gGCCGcggCGcACGGCGACcGUcGCGGACUCu -3'
miRNA:   3'- -UGGCa--GC-UGUCGCUGaCA-CGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 99947 0.74 0.68698
Target:  5'- cGCCG-CGGCGGCGGCUGcugcUGCGAAa-- -3'
miRNA:   3'- -UGGCaGCUGUCGCUGAC----ACGCUUgag -5'
15742 3' -54.7 NC_004065.1 + 109637 0.73 0.706733
Target:  5'- cACCGUCGAgGGCGucCUGcGCGA-CUCc -3'
miRNA:   3'- -UGGCAGCUgUCGCu-GACaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 154165 0.73 0.735884
Target:  5'- gGCgG-CGGCGGCGGCUGuUGCuGGCUCg -3'
miRNA:   3'- -UGgCaGCUGUCGCUGAC-ACGcUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 128750 0.73 0.735884
Target:  5'- aGCCGUCGGCAGCGGCa--GCGGcaGCg- -3'
miRNA:   3'- -UGGCAGCUGUCGCUGacaCGCU--UGag -5'
15742 3' -54.7 NC_004065.1 + 77734 0.72 0.773495
Target:  5'- cGCCGcCGccGCAG-GACUGgGCGAGCUCc -3'
miRNA:   3'- -UGGCaGC--UGUCgCUGACaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 211572 0.72 0.782615
Target:  5'- cCCGUCGAggaaucCGGCGGCUGUcCGAGgUCu -3'
miRNA:   3'- uGGCAGCU------GUCGCUGACAcGCUUgAG- -5'
15742 3' -54.7 NC_004065.1 + 118242 0.71 0.809164
Target:  5'- aGCCGUCGACGGaCG-C-GUG-GAGCUCg -3'
miRNA:   3'- -UGGCAGCUGUC-GCuGaCACgCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 93088 0.71 0.809164
Target:  5'- uGCCGUCG-UAGCGccgcacgaagagGCUGUGCGugUUCg -3'
miRNA:   3'- -UGGCAGCuGUCGC------------UGACACGCuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 138402 0.71 0.842363
Target:  5'- gACCGUCGACcGCGACUucUGCGGcgcGgUCa -3'
miRNA:   3'- -UGGCAGCUGuCGCUGAc-ACGCU---UgAG- -5'
15742 3' -54.7 NC_004065.1 + 189880 0.7 0.850221
Target:  5'- uGCCGUCGGCAGCGuCUca-CGAGCg- -3'
miRNA:   3'- -UGGCAGCUGUCGCuGAcacGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 103773 0.7 0.857888
Target:  5'- gACCGUCGcGCAGCaGCUG-GUGAuCUCc -3'
miRNA:   3'- -UGGCAGC-UGUCGcUGACaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 95771 0.7 0.865358
Target:  5'- cUCGUCGACGuGCGGCUcgGUGaCGggUUCc -3'
miRNA:   3'- uGGCAGCUGU-CGCUGA--CAC-GCuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 139411 0.7 0.865359
Target:  5'- cCCG-CGcGCAGCGAgaGUGCGcuGCUCa -3'
miRNA:   3'- uGGCaGC-UGUCGCUgaCACGCu-UGAG- -5'
15742 3' -54.7 NC_004065.1 + 130748 0.7 0.872627
Target:  5'- cUCGUCGugGGCGACc--GCGAGCa- -3'
miRNA:   3'- uGGCAGCugUCGCUGacaCGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 38931 0.7 0.879688
Target:  5'- uUCGUCGGCAGguCGGgUGU-CGAGCUCg -3'
miRNA:   3'- uGGCAGCUGUC--GCUgACAcGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 166385 0.69 0.893169
Target:  5'- uGCCGUCGAgCAGgGACaUGcUGCuggucgGGACUCg -3'
miRNA:   3'- -UGGCAGCU-GUCgCUG-AC-ACG------CUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.