miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 3' -54.7 NC_004065.1 + 172258 0.66 0.96862
Target:  5'- cACCGagagCGACGGCGGCg--GCGAcgacgauCUCu -3'
miRNA:   3'- -UGGCa---GCUGUCGCUGacaCGCUu------GAG- -5'
15742 3' -54.7 NC_004065.1 + 112855 0.66 0.96862
Target:  5'- uGCCGUCgGACAGCaGCUcGUccgGCaGACUCa -3'
miRNA:   3'- -UGGCAG-CUGUCGcUGA-CA---CGcUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 67497 0.67 0.965554
Target:  5'- cCCGUcCGAgaccuggccCGGCGGCUcGUGCGGAUguUCa -3'
miRNA:   3'- uGGCA-GCU---------GUCGCUGA-CACGCUUG--AG- -5'
15742 3' -54.7 NC_004065.1 + 163654 0.67 0.965554
Target:  5'- aGCCGcUCGACgaucAGCGGCcgGUGUu-GCUCa -3'
miRNA:   3'- -UGGC-AGCUG----UCGCUGa-CACGcuUGAG- -5'
15742 3' -54.7 NC_004065.1 + 78636 0.67 0.965554
Target:  5'- cGCgGUCGGCgagGGCGAC-GUGCcGACUa -3'
miRNA:   3'- -UGgCAGCUG---UCGCUGaCACGcUUGAg -5'
15742 3' -54.7 NC_004065.1 + 139112 0.67 0.965554
Target:  5'- gACgGUCGAC-GCGGuCUGcucCGAGCUCg -3'
miRNA:   3'- -UGgCAGCUGuCGCU-GACac-GCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 195896 0.67 0.962283
Target:  5'- gUCGUCGACga-GACg--GCGGACUCg -3'
miRNA:   3'- uGGCAGCUGucgCUGacaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 148634 0.67 0.962283
Target:  5'- uCUGgacagCGGCAGCGACUcgaugGCGAACa- -3'
miRNA:   3'- uGGCa----GCUGUCGCUGAca---CGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 164480 0.67 0.962283
Target:  5'- cGCCGgCGACgcgcccAGCGucaGCUGcGUGAACUCu -3'
miRNA:   3'- -UGGCaGCUG------UCGC---UGACaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 189040 0.67 0.958802
Target:  5'- cGCCGUCuACGGCGACgauuaUGUGC---CUCg -3'
miRNA:   3'- -UGGCAGcUGUCGCUG-----ACACGcuuGAG- -5'
15742 3' -54.7 NC_004065.1 + 137870 0.67 0.955107
Target:  5'- cGCCGcCGACAGCGuCgggGUgaucuucaGCGcGCUCg -3'
miRNA:   3'- -UGGCaGCUGUCGCuGa--CA--------CGCuUGAG- -5'
15742 3' -54.7 NC_004065.1 + 199221 0.67 0.951194
Target:  5'- cACCG-CGACGGUGACgacagGUGCauuguuCUCg -3'
miRNA:   3'- -UGGCaGCUGUCGCUGa----CACGcuu---GAG- -5'
15742 3' -54.7 NC_004065.1 + 94830 0.67 0.951194
Target:  5'- gGCCGUCGGCGGCGGCgcccaacaGUcccuCGGGCa- -3'
miRNA:   3'- -UGGCAGCUGUCGCUGa-------CAc---GCUUGag -5'
15742 3' -54.7 NC_004065.1 + 57460 0.67 0.95079
Target:  5'- cGCCGUCGugGcgauggcGCGGCggugGUGgUGAGCUUu -3'
miRNA:   3'- -UGGCAGCugU-------CGCUGa---CAC-GCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 203567 0.68 0.945341
Target:  5'- uGCCGUCGACcaccaacguguauGCGACcgcaGUcCGGACUCg -3'
miRNA:   3'- -UGGCAGCUGu------------CGCUGa---CAcGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 40657 0.68 0.942698
Target:  5'- cGCCGUCG-CAGCGAgUUGaUGCGAu--- -3'
miRNA:   3'- -UGGCAGCuGUCGCU-GAC-ACGCUugag -5'
15742 3' -54.7 NC_004065.1 + 165495 0.68 0.942698
Target:  5'- cGCCGUCGcgccGCAGCuGCUGcgugGUGAGCg- -3'
miRNA:   3'- -UGGCAGC----UGUCGcUGACa---CGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 63492 0.68 0.938111
Target:  5'- cGCCGUCGcGCAGCcag-GUGCGGAuggcCUCg -3'
miRNA:   3'- -UGGCAGC-UGUCGcugaCACGCUU----GAG- -5'
15742 3' -54.7 NC_004065.1 + 132401 0.68 0.93764
Target:  5'- uGCCGcaagggcggcucuUCGGCAGCGGCg--GCGGcCUCc -3'
miRNA:   3'- -UGGC-------------AGCUGUCGCUGacaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 116319 0.68 0.933295
Target:  5'- -gCGUCGGCGGCGGCaGcgGCGAcgGCgUCg -3'
miRNA:   3'- ugGCAGCUGUCGCUGaCa-CGCU--UG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.