miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 3' -54.7 NC_004065.1 + 24850 0.68 0.92825
Target:  5'- cGCCcgauGUUGGCGGCGACg--GCGGcCUCg -3'
miRNA:   3'- -UGG----CAGCUGUCGCUGacaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 26514 0.66 0.978953
Target:  5'- gACaCGUCGACGGgGAagccuUUGUGgGAuACUCc -3'
miRNA:   3'- -UG-GCAGCUGUCgCU-----GACACgCU-UGAG- -5'
15742 3' -54.7 NC_004065.1 + 26947 0.66 0.978953
Target:  5'- gACCGcucCGGCGGCcGCg--GCGGGCUCc -3'
miRNA:   3'- -UGGCa--GCUGUCGcUGacaCGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 27932 0.66 0.978953
Target:  5'- cGCCGcCGACAGaGACgcaGUGCGcACa- -3'
miRNA:   3'- -UGGCaGCUGUCgCUGa--CACGCuUGag -5'
15742 3' -54.7 NC_004065.1 + 34598 0.69 0.919698
Target:  5'- uCCGaCGACGGCGACgcgGCGGgagcguacguguacgGCUCg -3'
miRNA:   3'- uGGCaGCUGUCGCUGacaCGCU---------------UGAG- -5'
15742 3' -54.7 NC_004065.1 + 35596 0.66 0.976647
Target:  5'- -gCGUCGGCGGUGuCgGUGCGGGaUCc -3'
miRNA:   3'- ugGCAGCUGUCGCuGaCACGCUUgAG- -5'
15742 3' -54.7 NC_004065.1 + 38931 0.7 0.879688
Target:  5'- uUCGUCGGCAGguCGGgUGU-CGAGCUCg -3'
miRNA:   3'- uGGCAGCUGUC--GCUgACAcGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 40657 0.68 0.942698
Target:  5'- cGCCGUCG-CAGCGAgUUGaUGCGAu--- -3'
miRNA:   3'- -UGGCAGCuGUCGCU-GAC-ACGCUugag -5'
15742 3' -54.7 NC_004065.1 + 47395 0.66 0.978953
Target:  5'- cGCCGUCGGCacgagAGCGAa-GUGUGAGg-- -3'
miRNA:   3'- -UGGCAGCUG-----UCGCUgaCACGCUUgag -5'
15742 3' -54.7 NC_004065.1 + 48111 0.66 0.97416
Target:  5'- gGCgGU-GGCGGCGGCgGUGgGAcCUCg -3'
miRNA:   3'- -UGgCAgCUGUCGCUGaCACgCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 57460 0.67 0.95079
Target:  5'- cGCCGUCGugGcgauggcGCGGCggugGUGgUGAGCUUu -3'
miRNA:   3'- -UGGCAGCugU-------CGCUGa---CAC-GCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 57533 0.66 0.971487
Target:  5'- cACCGUCcGguGCGAg-GUGCccGAGCUCu -3'
miRNA:   3'- -UGGCAGcUguCGCUgaCACG--CUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 59719 0.75 0.626933
Target:  5'- gGCCGcggCGcACGGCGACcGUcGCGGACUCu -3'
miRNA:   3'- -UGGCa--GC-UGUCGCUGaCA-CGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 63154 0.66 0.978953
Target:  5'- cACCGUCGaACAcaagugccGCGAggccCUG-GCGAGCUg -3'
miRNA:   3'- -UGGCAGC-UGU--------CGCU----GACaCGCUUGAg -5'
15742 3' -54.7 NC_004065.1 + 63398 0.69 0.911733
Target:  5'- aGCCG-CGcCAGCGACUG-GaUGAGCUUc -3'
miRNA:   3'- -UGGCaGCuGUCGCUGACaC-GCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 63492 0.68 0.938111
Target:  5'- cGCCGUCGcGCAGCcag-GUGCGGAuggcCUCg -3'
miRNA:   3'- -UGGCAGC-UGUCGcugaCACGCUU----GAG- -5'
15742 3' -54.7 NC_004065.1 + 67463 0.69 0.917468
Target:  5'- gGCCGaggCGGCGGUGuACgUGUGCGAcgACUUc -3'
miRNA:   3'- -UGGCa--GCUGUCGC-UG-ACACGCU--UGAG- -5'
15742 3' -54.7 NC_004065.1 + 67497 0.67 0.965554
Target:  5'- cCCGUcCGAgaccuggccCGGCGGCUcGUGCGGAUguUCa -3'
miRNA:   3'- uGGCA-GCU---------GUCGCUGA-CACGCUUG--AG- -5'
15742 3' -54.7 NC_004065.1 + 73358 0.68 0.92825
Target:  5'- cACUuUCGAgAGCGACaUGUGCGAGgccaUCa -3'
miRNA:   3'- -UGGcAGCUgUCGCUG-ACACGCUUg---AG- -5'
15742 3' -54.7 NC_004065.1 + 77734 0.72 0.773495
Target:  5'- cGCCGcCGccGCAG-GACUGgGCGAGCUCc -3'
miRNA:   3'- -UGGCaGC--UGUCgCUGACaCGCUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.