miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 3' -54.7 NC_004065.1 + 63492 0.68 0.938111
Target:  5'- cGCCGUCGcGCAGCcag-GUGCGGAuggcCUCg -3'
miRNA:   3'- -UGGCAGC-UGUCGcugaCACGCUU----GAG- -5'
15742 3' -54.7 NC_004065.1 + 216880 0.69 0.909968
Target:  5'- gACgGUCGuucGCGGCGGCgcgagGUGCGAgaagagaagaagauGCUCc -3'
miRNA:   3'- -UGgCAGC---UGUCGCUGa----CACGCU--------------UGAG- -5'
15742 3' -54.7 NC_004065.1 + 118093 0.69 0.911733
Target:  5'- cACCG-CGACGGCGGCgcccaugGCGucuCUCg -3'
miRNA:   3'- -UGGCaGCUGUCGCUGaca----CGCuu-GAG- -5'
15742 3' -54.7 NC_004065.1 + 99366 0.69 0.917468
Target:  5'- -gCGUUGGCAGCGACg--GCGccgacugucccGACUCg -3'
miRNA:   3'- ugGCAGCUGUCGCUGacaCGC-----------UUGAG- -5'
15742 3' -54.7 NC_004065.1 + 67463 0.69 0.917468
Target:  5'- gGCCGaggCGGCGGUGuACgUGUGCGAcgACUUc -3'
miRNA:   3'- -UGGCa--GCUGUCGC-UG-ACACGCU--UGAG- -5'
15742 3' -54.7 NC_004065.1 + 163483 0.69 0.917468
Target:  5'- uCCGUCGGCGGCGcCgGUgGCGGcgGCUUc -3'
miRNA:   3'- uGGCAGCUGUCGCuGaCA-CGCU--UGAG- -5'
15742 3' -54.7 NC_004065.1 + 135536 0.69 0.917468
Target:  5'- gACCGUCGACGuCGACgucgGacggGCGGACg- -3'
miRNA:   3'- -UGGCAGCUGUcGCUGa---Ca---CGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 73358 0.68 0.92825
Target:  5'- cACUuUCGAgAGCGACaUGUGCGAGgccaUCa -3'
miRNA:   3'- -UGGcAGCUgUCGCUG-ACACGCUUg---AG- -5'
15742 3' -54.7 NC_004065.1 + 24850 0.68 0.92825
Target:  5'- cGCCcgauGUUGGCGGCGACg--GCGGcCUCg -3'
miRNA:   3'- -UGG----CAGCUGUCGCUGacaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 143440 0.69 0.899581
Target:  5'- cACCGUucCGACuGCGACgagGUGCc-GCUCu -3'
miRNA:   3'- -UGGCA--GCUGuCGCUGa--CACGcuUGAG- -5'
15742 3' -54.7 NC_004065.1 + 166385 0.69 0.893169
Target:  5'- uGCCGUCGAgCAGgGACaUGcUGCuggucgGGACUCg -3'
miRNA:   3'- -UGGCAGCU-GUCgCUG-AC-ACG------CUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 130748 0.7 0.872627
Target:  5'- cUCGUCGugGGCGACc--GCGAGCa- -3'
miRNA:   3'- uGGCAGCugUCGCUGacaCGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 97028 0.76 0.567003
Target:  5'- uACUGUCGugGGUG-CUgcgcGUGCGAGCUCu -3'
miRNA:   3'- -UGGCAGCugUCGCuGA----CACGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 59719 0.75 0.626933
Target:  5'- gGCCGcggCGcACGGCGACcGUcGCGGACUCu -3'
miRNA:   3'- -UGGCa--GC-UGUCGCUGaCA-CGCUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 109637 0.73 0.706733
Target:  5'- cACCGUCGAgGGCGucCUGcGCGA-CUCc -3'
miRNA:   3'- -UGGCAGCUgUCGCu-GACaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 154165 0.73 0.735884
Target:  5'- gGCgG-CGGCGGCGGCUGuUGCuGGCUCg -3'
miRNA:   3'- -UGgCaGCUGUCGCUGAC-ACGcUUGAG- -5'
15742 3' -54.7 NC_004065.1 + 128750 0.73 0.735884
Target:  5'- aGCCGUCGGCAGCGGCa--GCGGcaGCg- -3'
miRNA:   3'- -UGGCAGCUGUCGCUGacaCGCU--UGag -5'
15742 3' -54.7 NC_004065.1 + 189880 0.7 0.850221
Target:  5'- uGCCGUCGGCAGCGuCUca-CGAGCg- -3'
miRNA:   3'- -UGGCAGCUGUCGCuGAcacGCUUGag -5'
15742 3' -54.7 NC_004065.1 + 103773 0.7 0.857888
Target:  5'- gACCGUCGcGCAGCaGCUG-GUGAuCUCc -3'
miRNA:   3'- -UGGCAGC-UGUCGcUGACaCGCUuGAG- -5'
15742 3' -54.7 NC_004065.1 + 139411 0.7 0.865359
Target:  5'- cCCG-CGcGCAGCGAgaGUGCGcuGCUCa -3'
miRNA:   3'- uGGCaGC-UGUCGCUgaCACGCu-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.