miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 5' -60.5 NC_004065.1 + 194523 0.65 0.846682
Target:  5'- gUCGCCUCCaagacgccggucguGCCcgugaacgUCGUCaCGggcaccgcgcagcGCGUCGACu -3'
miRNA:   3'- -AGCGGAGG--------------CGG--------AGCAG-GU-------------CGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 139908 0.66 0.842142
Target:  5'- -gGCCUCCgGCCggCGgcgCCAGCGggUUGAa -3'
miRNA:   3'- agCGGAGG-CGGa-GCa--GGUCGC--AGCUg -5'
15742 5' -60.5 NC_004065.1 + 164471 0.66 0.842142
Target:  5'- cUCGCgacCCGCCggcgacgCGcCCAGCGUCaGCu -3'
miRNA:   3'- -AGCGga-GGCGGa------GCaGGUCGCAGcUG- -5'
15742 5' -60.5 NC_004065.1 + 154550 0.66 0.84138
Target:  5'- cUCGCCgCCGCCaucgcccUCGUCCuGCucUGGCu -3'
miRNA:   3'- -AGCGGaGGCGG-------AGCAGGuCGcaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 109940 0.66 0.834441
Target:  5'- uUCGCCUCCGuUCUCcaacaUCCuGGCGUUG-Ca -3'
miRNA:   3'- -AGCGGAGGC-GGAGc----AGG-UCGCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 151698 0.66 0.834441
Target:  5'- gCGCC-CUGCaUCGUCU-GCGUCGGg -3'
miRNA:   3'- aGCGGaGGCGgAGCAGGuCGCAGCUg -5'
15742 5' -60.5 NC_004065.1 + 17315 0.66 0.834441
Target:  5'- -gGCCUcggagCCGCCUUcgaGUCCGGUGUCc-- -3'
miRNA:   3'- agCGGA-----GGCGGAG---CAGGUCGCAGcug -5'
15742 5' -60.5 NC_004065.1 + 35214 0.66 0.834441
Target:  5'- -gGCCaCCGCCacggCGUUCAGgGgcUCGACg -3'
miRNA:   3'- agCGGaGGCGGa---GCAGGUCgC--AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 197055 0.66 0.834441
Target:  5'- -gGCCUCCGUCaUGcUCCGccgcGaCGUCGACg -3'
miRNA:   3'- agCGGAGGCGGaGC-AGGU----C-GCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 212735 0.66 0.829741
Target:  5'- gUUGUCUCCGCCgcaccCGacaccaccUCCGGCGgugaagaagaggaggUCGACg -3'
miRNA:   3'- -AGCGGAGGCGGa----GC--------AGGUCGC---------------AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 120128 0.66 0.826577
Target:  5'- cUCGCCggCGCCgUCccuaCCAGCGUucCGACg -3'
miRNA:   3'- -AGCGGagGCGG-AGca--GGUCGCA--GCUG- -5'
15742 5' -60.5 NC_004065.1 + 152053 0.66 0.826577
Target:  5'- cUCGCCgCgGCCagCGUCuCGGgGcUCGACg -3'
miRNA:   3'- -AGCGGaGgCGGa-GCAG-GUCgC-AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 76755 0.66 0.826577
Target:  5'- gCGCCggCgGCCUCGUCau-CGUcCGGCg -3'
miRNA:   3'- aGCGGa-GgCGGAGCAGgucGCA-GCUG- -5'
15742 5' -60.5 NC_004065.1 + 83148 0.66 0.826577
Target:  5'- aUCGUCacugCCGCCcgCGUUCAcGCGcCGAUg -3'
miRNA:   3'- -AGCGGa---GGCGGa-GCAGGU-CGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 145200 0.66 0.824187
Target:  5'- cCGCUUUCGCCaUCGUgCAggugucucguguccGCgGUCGACg -3'
miRNA:   3'- aGCGGAGGCGG-AGCAgGU--------------CG-CAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 191856 0.66 0.821783
Target:  5'- aUGCCgcuggcgcggaucgCCGCgUCuUCCAGCGUCaGCa -3'
miRNA:   3'- aGCGGa-------------GGCGgAGcAGGUCGCAGcUG- -5'
15742 5' -60.5 NC_004065.1 + 210990 0.66 0.818557
Target:  5'- -gGCCaccgCCGCCgUCGUCCaacccuucggAGuCGUCGAUc -3'
miRNA:   3'- agCGGa---GGCGG-AGCAGG----------UC-GCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 201366 0.66 0.818557
Target:  5'- gCGCgagCUgCGCCUCG-CCGGggggugccaCGUCGACg -3'
miRNA:   3'- aGCG---GAgGCGGAGCaGGUC---------GCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 124889 0.66 0.818557
Target:  5'- gUUGCgCUCCucgaugugcGCCgCGUCCAGCGgcacgucgUCGGCc -3'
miRNA:   3'- -AGCG-GAGG---------CGGaGCAGGUCGC--------AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 62603 0.66 0.818557
Target:  5'- gCGCCgCCGCCccCG-CCGGCGgcagcagccgCGGCa -3'
miRNA:   3'- aGCGGaGGCGGa-GCaGGUCGCa---------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.