Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15742 | 5' | -60.5 | NC_004065.1 | + | 194523 | 0.65 | 0.846682 |
Target: 5'- gUCGCCUCCaagacgccggucguGCCcgugaacgUCGUCaCGggcaccgcgcagcGCGUCGACu -3' miRNA: 3'- -AGCGGAGG--------------CGG--------AGCAG-GU-------------CGCAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 191856 | 0.66 | 0.821783 |
Target: 5'- aUGCCgcuggcgcggaucgCCGCgUCuUCCAGCGUCaGCa -3' miRNA: 3'- aGCGGa-------------GGCGgAGcAGGUCGCAGcUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 210990 | 0.66 | 0.818557 |
Target: 5'- -gGCCaccgCCGCCgUCGUCCaacccuucggAGuCGUCGAUc -3' miRNA: 3'- agCGGa---GGCGG-AGCAGG----------UC-GCAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 17315 | 0.66 | 0.834441 |
Target: 5'- -gGCCUcggagCCGCCUUcgaGUCCGGUGUCc-- -3' miRNA: 3'- agCGGA-----GGCGGAG---CAGGUCGCAGcug -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 157467 | 0.66 | 0.802075 |
Target: 5'- cCGCUUCuUGCugcgagaaCUCGUCCAGCagcgacaucGUCGGCu -3' miRNA: 3'- aGCGGAG-GCG--------GAGCAGGUCG---------CAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 151698 | 0.66 | 0.834441 |
Target: 5'- gCGCC-CUGCaUCGUCU-GCGUCGGg -3' miRNA: 3'- aGCGGaGGCGgAGCAGGuCGCAGCUg -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 99683 | 0.66 | 0.800396 |
Target: 5'- -aGCCcgCUgGCCUCGUCCAGCuuguacaucagCGGCa -3' miRNA: 3'- agCGGa-GG-CGGAGCAGGUCGca---------GCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 87600 | 0.66 | 0.802075 |
Target: 5'- aCG-CUCCaCgUCGUUCAGCGUCGcCa -3' miRNA: 3'- aGCgGAGGcGgAGCAGGUCGCAGCuG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 43047 | 0.66 | 0.802075 |
Target: 5'- cCGCgUCgGCUUC-UCgaGGCGUCGGCg -3' miRNA: 3'- aGCGgAGgCGGAGcAGg-UCGCAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 126123 | 0.66 | 0.801236 |
Target: 5'- gCGaCCUCCGCCUCGcgagaugaugaucUCCAGCa----- -3' miRNA: 3'- aGC-GGAGGCGGAGC-------------AGGUCGcagcug -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 199185 | 0.66 | 0.810387 |
Target: 5'- gUCGUCgUCgGCUUCGUCgAGgGUCG-Cg -3' miRNA: 3'- -AGCGG-AGgCGGAGCAGgUCgCAGCuG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 127387 | 0.66 | 0.816935 |
Target: 5'- cUCGCCguucgaggacucCCGCCUCucCCAGgccgucacCGUCGACg -3' miRNA: 3'- -AGCGGa-----------GGCGGAGcaGGUC--------GCAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 124889 | 0.66 | 0.818557 |
Target: 5'- gUUGCgCUCCucgaugugcGCCgCGUCCAGCGgcacgucgUCGGCc -3' miRNA: 3'- -AGCG-GAGG---------CGGaGCAGGUCGC--------AGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 62603 | 0.66 | 0.818557 |
Target: 5'- gCGCCgCCGCCccCG-CCGGCGgcagcagccgCGGCa -3' miRNA: 3'- aGCGGaGGCGGa-GCaGGUCGCa---------GCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 76755 | 0.66 | 0.826577 |
Target: 5'- gCGCCggCgGCCUCGUCau-CGUcCGGCg -3' miRNA: 3'- aGCGGa-GgCGGAGCAGgucGCA-GCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 83148 | 0.66 | 0.826577 |
Target: 5'- aUCGUCacugCCGCCcgCGUUCAcGCGcCGAUg -3' miRNA: 3'- -AGCGGa---GGCGGa-GCAGGU-CGCaGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 120128 | 0.66 | 0.826577 |
Target: 5'- cUCGCCggCGCCgUCccuaCCAGCGUucCGACg -3' miRNA: 3'- -AGCGGagGCGG-AGca--GGUCGCA--GCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 100018 | 0.66 | 0.802075 |
Target: 5'- cCGCCguacagcaUCGCCUCGUCCgccgcccccgcGGCGUUcugcgGACa -3' miRNA: 3'- aGCGGa-------GGCGGAGCAGG-----------UCGCAG-----CUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 145200 | 0.66 | 0.824187 |
Target: 5'- cCGCUUUCGCCaUCGUgCAggugucucguguccGCgGUCGACg -3' miRNA: 3'- aGCGGAGGCGG-AGCAgGU--------------CG-CAGCUG- -5' |
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15742 | 5' | -60.5 | NC_004065.1 | + | 201366 | 0.66 | 0.818557 |
Target: 5'- gCGCgagCUgCGCCUCG-CCGGggggugccaCGUCGACg -3' miRNA: 3'- aGCG---GAgGCGGAGCaGGUC---------GCAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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