miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 5' -60.5 NC_004065.1 + 127387 0.66 0.816935
Target:  5'- cUCGCCguucgaggacucCCGCCUCucCCAGgccgucacCGUCGACg -3'
miRNA:   3'- -AGCGGa-----------GGCGGAGcaGGUC--------GCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 199185 0.66 0.810387
Target:  5'- gUCGUCgUCgGCUUCGUCgAGgGUCG-Cg -3'
miRNA:   3'- -AGCGG-AGgCGGAGCAGgUCgCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 87600 0.66 0.802075
Target:  5'- aCG-CUCCaCgUCGUUCAGCGUCGcCa -3'
miRNA:   3'- aGCgGAGGcGgAGCAGGUCGCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 43352 0.66 0.802075
Target:  5'- gCGCCgcguccCCGacaCUCGUCCga-GUCGACg -3'
miRNA:   3'- aGCGGa-----GGCg--GAGCAGGucgCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 100018 0.66 0.802075
Target:  5'- cCGCCguacagcaUCGCCUCGUCCgccgcccccgcGGCGUUcugcgGACa -3'
miRNA:   3'- aGCGGa-------GGCGGAGCAGG-----------UCGCAG-----CUG- -5'
15742 5' -60.5 NC_004065.1 + 43047 0.66 0.802075
Target:  5'- cCGCgUCgGCUUC-UCgaGGCGUCGGCg -3'
miRNA:   3'- aGCGgAGgCGGAGcAGg-UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 157467 0.66 0.802075
Target:  5'- cCGCUUCuUGCugcgagaaCUCGUCCAGCagcgacaucGUCGGCu -3'
miRNA:   3'- aGCGGAG-GCG--------GAGCAGGUCG---------CAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 126123 0.66 0.801236
Target:  5'- gCGaCCUCCGCCUCGcgagaugaugaucUCCAGCa----- -3'
miRNA:   3'- aGC-GGAGGCGGAGC-------------AGGUCGcagcug -5'
15742 5' -60.5 NC_004065.1 + 99683 0.66 0.800396
Target:  5'- -aGCCcgCUgGCCUCGUCCAGCuuguacaucagCGGCa -3'
miRNA:   3'- agCGGa-GG-CGGAGCAGGUCGca---------GCUG- -5'
15742 5' -60.5 NC_004065.1 + 111127 0.67 0.793627
Target:  5'- gUCGCCaUCUGgCUCGUgC-GCGUCGuCu -3'
miRNA:   3'- -AGCGG-AGGCgGAGCAgGuCGCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 110420 0.67 0.793627
Target:  5'- gUCuCCUCCGCCg---CCGGCGUCcuGCa -3'
miRNA:   3'- -AGcGGAGGCGGagcaGGUCGCAGc-UG- -5'
15742 5' -60.5 NC_004065.1 + 155182 0.67 0.792775
Target:  5'- cCGCCUcaaccugcgCCGCCUCGgUCCcgacccgGGCGUCu-- -3'
miRNA:   3'- aGCGGA---------GGCGGAGC-AGG-------UCGCAGcug -5'
15742 5' -60.5 NC_004065.1 + 42084 0.67 0.78505
Target:  5'- cUCGCUgaugUgCGCgUCG-CCGGCGcCGACg -3'
miRNA:   3'- -AGCGG----AgGCGgAGCaGGUCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 114270 0.67 0.78505
Target:  5'- cCGCCUCCGCUUUc-CCGGC--CGACu -3'
miRNA:   3'- aGCGGAGGCGGAGcaGGUCGcaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 145308 0.67 0.78505
Target:  5'- aCGUCgCCGCUUCGggugCCgAGCGacacUCGACa -3'
miRNA:   3'- aGCGGaGGCGGAGCa---GG-UCGC----AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 135809 0.67 0.776352
Target:  5'- cUCuCCUCCGaUCUUcaUCGGCGUCGGCg -3'
miRNA:   3'- -AGcGGAGGC-GGAGcaGGUCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 109648 0.67 0.776352
Target:  5'- cCGCCcgaUCCGCCggagagcgaaCGUCaGGCGcCGACg -3'
miRNA:   3'- aGCGG---AGGCGGa---------GCAGgUCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 116288 0.67 0.76754
Target:  5'- -gGCCUCCucGCCggaGUucuccgaggugUCGGCGUCGGCg -3'
miRNA:   3'- agCGGAGG--CGGag-CA-----------GGUCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 161384 0.67 0.76754
Target:  5'- aCGCCUCgGCCgccUGUgCCAGCGaCGcCa -3'
miRNA:   3'- aGCGGAGgCGGa--GCA-GGUCGCaGCuG- -5'
15742 5' -60.5 NC_004065.1 + 159141 0.67 0.76754
Target:  5'- aUCGCCUgCGagUUGUCCAGCaggGUCGcCa -3'
miRNA:   3'- -AGCGGAgGCggAGCAGGUCG---CAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.