miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 5' -60.5 NC_004065.1 + 4653 0.69 0.665263
Target:  5'- gCGCCcCCGCCgcgggCGUCCAGagacaGagGACu -3'
miRNA:   3'- aGCGGaGGCGGa----GCAGGUCg----CagCUG- -5'
15742 5' -60.5 NC_004065.1 + 6941 0.69 0.636458
Target:  5'- -gGCgUCCGCCgUCGgaagCU-GCGUCGACg -3'
miRNA:   3'- agCGgAGGCGG-AGCa---GGuCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 7217 0.69 0.674826
Target:  5'- -gGCUUCUcggGCCUCGUCguGUG-CGACa -3'
miRNA:   3'- agCGGAGG---CGGAGCAGguCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 17315 0.66 0.834441
Target:  5'- -gGCCUcggagCCGCCUUcgaGUCCGGUGUCc-- -3'
miRNA:   3'- agCGGA-----GGCGGAG---CAGGUCGCAGcug -5'
15742 5' -60.5 NC_004065.1 + 20344 0.71 0.559967
Target:  5'- gUCGCCggu-CCUCGUUCuuacGGCGUCGACg -3'
miRNA:   3'- -AGCGGaggcGGAGCAGG----UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 26022 0.69 0.68436
Target:  5'- -gGCCUCgGCgUCGUCCaccAGCGgcucgcacgCGGCg -3'
miRNA:   3'- agCGGAGgCGgAGCAGG---UCGCa--------GCUG- -5'
15742 5' -60.5 NC_004065.1 + 27435 0.69 0.674826
Target:  5'- -aGCCUCUGCC-CGUCCcacCGUCGuCu -3'
miRNA:   3'- agCGGAGGCGGaGCAGGuc-GCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 27627 0.68 0.740496
Target:  5'- cCG-CUCCGCUUCGUCCGcccgucucguGCG-CGAUg -3'
miRNA:   3'- aGCgGAGGCGGAGCAGGU----------CGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 28828 0.68 0.719242
Target:  5'- gUCGCCgcgCCGCC-CGagCCgggacgcgccgcuuGGUGUCGGCg -3'
miRNA:   3'- -AGCGGa--GGCGGaGCa-GG--------------UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 29161 0.69 0.636458
Target:  5'- uUCGCCaCCGCCcgCGcCCc-CGUCGACg -3'
miRNA:   3'- -AGCGGaGGCGGa-GCaGGucGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 30586 0.68 0.703304
Target:  5'- cCGCCgcggcgagCGCCUCGUCC-GCGUuccgaggcagCGACg -3'
miRNA:   3'- aGCGGag------GCGGAGCAGGuCGCA----------GCUG- -5'
15742 5' -60.5 NC_004065.1 + 31134 0.69 0.665263
Target:  5'- cCGUCUCCGUCUCcgacUCgGGCaUCGACa -3'
miRNA:   3'- aGCGGAGGCGGAGc---AGgUCGcAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 35214 0.66 0.834441
Target:  5'- -gGCCaCCGCCacggCGUUCAGgGgcUCGACg -3'
miRNA:   3'- agCGGaGGCGGa---GCAGGUCgC--AGCUG- -5'
15742 5' -60.5 NC_004065.1 + 36319 0.67 0.758621
Target:  5'- aUCGCaCUCUGCCUCcUCgCGGcCGUgaCGGCg -3'
miRNA:   3'- -AGCG-GAGGCGGAGcAG-GUC-GCA--GCUG- -5'
15742 5' -60.5 NC_004065.1 + 37023 0.69 0.674826
Target:  5'- cCGCUaCCGCC-CG-CCAGagaGUCGACc -3'
miRNA:   3'- aGCGGaGGCGGaGCaGGUCg--CAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 41978 0.68 0.722036
Target:  5'- cUCGUgUgCUGCCUCGUCUguuGCGUCGu- -3'
miRNA:   3'- -AGCGgA-GGCGGAGCAGGu--CGCAGCug -5'
15742 5' -60.5 NC_004065.1 + 42084 0.67 0.78505
Target:  5'- cUCGCUgaugUgCGCgUCG-CCGGCGcCGACg -3'
miRNA:   3'- -AGCGG----AgGCGgAGCaGGUCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 43047 0.66 0.802075
Target:  5'- cCGCgUCgGCUUC-UCgaGGCGUCGGCg -3'
miRNA:   3'- aGCGgAGgCGGAGcAGg-UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 43352 0.66 0.802075
Target:  5'- gCGCCgcguccCCGacaCUCGUCCga-GUCGACg -3'
miRNA:   3'- aGCGGa-----GGCg--GAGCAGGucgCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 44643 0.69 0.655675
Target:  5'- cUCGCCUCauCGCUUCGaagacgaCGGCGUCGuCg -3'
miRNA:   3'- -AGCGGAG--GCGGAGCag-----GUCGCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.