miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15742 5' -60.5 NC_004065.1 + 37023 0.69 0.674826
Target:  5'- cCGCUaCCGCC-CG-CCAGagaGUCGACc -3'
miRNA:   3'- aGCGGaGGCGGaGCaGGUCg--CAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 124837 0.7 0.607624
Target:  5'- gCGgCUCCGCCUgGUCCAuCG-CGAUc -3'
miRNA:   3'- aGCgGAGGCGGAgCAGGUcGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 81173 0.7 0.621072
Target:  5'- cCGCCUccucgaucgcggcggCCGCCUCGUggCCgAGCGagGGCa -3'
miRNA:   3'- aGCGGA---------------GGCGGAGCA--GG-UCGCagCUG- -5'
15742 5' -60.5 NC_004065.1 + 111736 0.7 0.626841
Target:  5'- gUCGCCUUCGCCugcgacguggUCGUCaaguacgucgaGGCGcCGGCg -3'
miRNA:   3'- -AGCGGAGGCGG----------AGCAGg----------UCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 222694 0.69 0.636458
Target:  5'- aCGgCUCCGCCgCGUCCGGUaccacCGGCu -3'
miRNA:   3'- aGCgGAGGCGGaGCAGGUCGca---GCUG- -5'
15742 5' -60.5 NC_004065.1 + 44643 0.69 0.655675
Target:  5'- cUCGCCUCauCGCUUCGaagacgaCGGCGUCGuCg -3'
miRNA:   3'- -AGCGGAG--GCGGAGCag-----GUCGCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 200074 0.69 0.655675
Target:  5'- -gGCCUCU-CCUCG-CCAGCucGUCGAUg -3'
miRNA:   3'- agCGGAGGcGGAGCaGGUCG--CAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 31134 0.69 0.665263
Target:  5'- cCGUCUCCGUCUCcgacUCgGGCaUCGACa -3'
miRNA:   3'- aGCGGAGGCGGAGc---AGgUCGcAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 27435 0.69 0.674826
Target:  5'- -aGCCUCUGCC-CGUCCcacCGUCGuCu -3'
miRNA:   3'- agCGGAGGCGGaGCAGGuc-GCAGCuG- -5'
15742 5' -60.5 NC_004065.1 + 195519 0.71 0.550547
Target:  5'- gCGCC-CgGUCcCGUCCAGCG-CGGCg -3'
miRNA:   3'- aGCGGaGgCGGaGCAGGUCGCaGCUG- -5'
15742 5' -60.5 NC_004065.1 + 99340 0.71 0.550547
Target:  5'- uUCuCCUCCGCCUCcucgCCcgacgAGCGUUGGCa -3'
miRNA:   3'- -AGcGGAGGCGGAGca--GG-----UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 130087 0.72 0.513405
Target:  5'- -aGCCgCCGCCgcggCgGUCCGGCGUCaugGACg -3'
miRNA:   3'- agCGGaGGCGGa---G-CAGGUCGCAG---CUG- -5'
15742 5' -60.5 NC_004065.1 + 56879 0.77 0.256326
Target:  5'- -gGCCUCCGCCUgGuaUCCAGCGUgCGGa -3'
miRNA:   3'- agCGGAGGCGGAgC--AGGUCGCA-GCUg -5'
15742 5' -60.5 NC_004065.1 + 118324 0.76 0.286452
Target:  5'- gUCGCCagcgggaCCGCCgaCGUCCauGGCGUCGGCg -3'
miRNA:   3'- -AGCGGa------GGCGGa-GCAGG--UCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 78635 0.76 0.312511
Target:  5'- cCGCCUCCGCCacccaagagaUCGgccgCCAGCGcagCGGCc -3'
miRNA:   3'- aGCGGAGGCGG----------AGCa---GGUCGCa--GCUG- -5'
15742 5' -60.5 NC_004065.1 + 120427 0.74 0.377558
Target:  5'- cUCGCuCUCCGaCCUCGUCCGGgcccucuugcUGUCGGg -3'
miRNA:   3'- -AGCG-GAGGC-GGAGCAGGUC----------GCAGCUg -5'
15742 5' -60.5 NC_004065.1 + 109207 0.74 0.401174
Target:  5'- gCGCCUCgGCCUCuUCCuGC-UCGGCg -3'
miRNA:   3'- aGCGGAGgCGGAGcAGGuCGcAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 128507 0.74 0.401174
Target:  5'- cCGCCUCCaccgacgacgauGCCUCcg-CGGCGUCGACg -3'
miRNA:   3'- aGCGGAGG------------CGGAGcagGUCGCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 166110 0.73 0.425709
Target:  5'- gCGCCUCCGCCUguugaugaaucaCGUCggCAGagaCGUCGGCg -3'
miRNA:   3'- aGCGGAGGCGGA------------GCAG--GUC---GCAGCUG- -5'
15742 5' -60.5 NC_004065.1 + 194950 0.72 0.47733
Target:  5'- -aGCCcCCGUCUCG-CCAGCugGUCGAUg -3'
miRNA:   3'- agCGGaGGCGGAGCaGGUCG--CAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.