miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15743 3' -52.8 NC_004065.1 + 40313 0.66 0.995046
Target:  5'- -uGUUUGCGAUGcCGGUGUCguCGUgGAGg -3'
miRNA:   3'- ugUAGACGCUGU-GCUACAG--GCAgCUC- -5'
15743 3' -52.8 NC_004065.1 + 30462 0.66 0.995046
Target:  5'- gGCGUCUggaccGCGGCACGAUGgggcgcgcCCGgcugGAGg -3'
miRNA:   3'- -UGUAGA-----CGCUGUGCUACa-------GGCag--CUC- -5'
15743 3' -52.8 NC_004065.1 + 188627 0.66 0.993948
Target:  5'- aACuUCcGCGAgucgcuguauuuaACGAUGUCCGcUCGAGg -3'
miRNA:   3'- -UGuAGaCGCUg------------UGCUACAGGC-AGCUC- -5'
15743 3' -52.8 NC_004065.1 + 30621 0.66 0.993421
Target:  5'- -----aGCGACGCG-UGUCCGUCc-- -3'
miRNA:   3'- uguagaCGCUGUGCuACAGGCAGcuc -5'
15743 3' -52.8 NC_004065.1 + 138966 0.66 0.992562
Target:  5'- cGCGUCUGCGAgaccagucgccuCAuCGAggccggucugcagcaGUUCGUCGAGg -3'
miRNA:   3'- -UGUAGACGCU------------GU-GCUa--------------CAGGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 119518 0.66 0.992461
Target:  5'- aGCAUggGCGGCGCGggGacgUgGUCGAGg -3'
miRNA:   3'- -UGUAgaCGCUGUGCuaCa--GgCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 186726 0.66 0.991393
Target:  5'- gGCAUgCUGaagGACAgGGUGUUCGUCGc- -3'
miRNA:   3'- -UGUA-GACg--CUGUgCUACAGGCAGCuc -5'
15743 3' -52.8 NC_004065.1 + 131980 0.66 0.991393
Target:  5'- aGCAUgUGgGACACGcaGUCCG-CGAu -3'
miRNA:   3'- -UGUAgACgCUGUGCuaCAGGCaGCUc -5'
15743 3' -52.8 NC_004065.1 + 29625 0.67 0.990209
Target:  5'- gACAUCUuccugGCGcagaACGAccacacGUCCGUCGAGa -3'
miRNA:   3'- -UGUAGA-----CGCug--UGCUa-----CAGGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 37397 0.67 0.990209
Target:  5'- aACGUguacCUuCGACGCGGUGUCCGaCGGc -3'
miRNA:   3'- -UGUA----GAcGCUGUGCUACAGGCaGCUc -5'
15743 3' -52.8 NC_004065.1 + 110189 0.67 0.988901
Target:  5'- gGCggCcGCGACGCGccGccgcCCGUCGAGa -3'
miRNA:   3'- -UGuaGaCGCUGUGCuaCa---GGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 99850 0.67 0.988901
Target:  5'- aGCGUCUGCGcCcCGAUcgccgCCGUgCGAGg -3'
miRNA:   3'- -UGUAGACGCuGuGCUAca---GGCA-GCUC- -5'
15743 3' -52.8 NC_004065.1 + 194064 0.67 0.988901
Target:  5'- gGCAggagCaGCGGCGCGA-GUCCGaCGAc -3'
miRNA:   3'- -UGUa---GaCGCUGUGCUaCAGGCaGCUc -5'
15743 3' -52.8 NC_004065.1 + 161933 0.67 0.987461
Target:  5'- cCGUCcguaGCGACuCGGUGcUCgCGUCGAGu -3'
miRNA:   3'- uGUAGa---CGCUGuGCUAC-AG-GCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 33175 0.67 0.987461
Target:  5'- uGCA-CUGCGAgACGcUGUaCCGUCGc- -3'
miRNA:   3'- -UGUaGACGCUgUGCuACA-GGCAGCuc -5'
15743 3' -52.8 NC_004065.1 + 132608 0.67 0.985881
Target:  5'- uACcgCUGCGGCAUGAUcUCCGagcugaucuUCGAc -3'
miRNA:   3'- -UGuaGACGCUGUGCUAcAGGC---------AGCUc -5'
15743 3' -52.8 NC_004065.1 + 159495 0.67 0.984153
Target:  5'- cGCGcCUGCaGGCGCGccUGcagcUCCGUCGAGa -3'
miRNA:   3'- -UGUaGACG-CUGUGCu-AC----AGGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 160813 0.67 0.982269
Target:  5'- --uUCaGCGACGgGAUGUucaCCGUCGAc -3'
miRNA:   3'- uguAGaCGCUGUgCUACA---GGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 34262 0.67 0.982269
Target:  5'- -gGUCagcGCGACACGgcG-CCGUCGAu -3'
miRNA:   3'- ugUAGa--CGCUGUGCuaCaGGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 39200 0.68 0.980221
Target:  5'- --uUCUcGCG-CACGGUGUCgCGUCGcAGa -3'
miRNA:   3'- uguAGA-CGCuGUGCUACAG-GCAGC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.