miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15743 3' -52.8 NC_004065.1 + 44515 0.68 0.978002
Target:  5'- uCGUCcgGCGGCGCGAUGUUac-CGGGg -3'
miRNA:   3'- uGUAGa-CGCUGUGCUACAGgcaGCUC- -5'
15743 3' -52.8 NC_004065.1 + 30899 0.68 0.970246
Target:  5'- gGCGUCgggGUcGCACucGUGUCCGUCGAc -3'
miRNA:   3'- -UGUAGa--CGcUGUGc-UACAGGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 18297 0.68 0.970246
Target:  5'- uCGUCgaGCGGCugGAcgGUCCGUCu-- -3'
miRNA:   3'- uGUAGa-CGCUGugCUa-CAGGCAGcuc -5'
15743 3' -52.8 NC_004065.1 + 138213 0.69 0.959648
Target:  5'- gACGUCU-CGACcgcgcucuGCGAUGUcgaggcgcucgccgCCGUCGAGg -3'
miRNA:   3'- -UGUAGAcGCUG--------UGCUACA--------------GGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 82842 0.69 0.957104
Target:  5'- aGCGUCUccaaucGCGACGgGGUuUCCGUCGcAGg -3'
miRNA:   3'- -UGUAGA------CGCUGUgCUAcAGGCAGC-UC- -5'
15743 3' -52.8 NC_004065.1 + 27417 0.69 0.953282
Target:  5'- gGCGUaUGcCGuCACGAUGUCCGcccgCGAGu -3'
miRNA:   3'- -UGUAgAC-GCuGUGCUACAGGCa---GCUC- -5'
15743 3' -52.8 NC_004065.1 + 185617 0.7 0.949237
Target:  5'- -gAUCUGCGAC-UGAucuUGUaucCCGUCGAGu -3'
miRNA:   3'- ugUAGACGCUGuGCU---ACA---GGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 85680 0.7 0.940466
Target:  5'- gGCGUCUGCGGCGCcAUGuaccccaucaUCCGcuaCGAGg -3'
miRNA:   3'- -UGUAGACGCUGUGcUAC----------AGGCa--GCUC- -5'
15743 3' -52.8 NC_004065.1 + 134149 0.7 0.939539
Target:  5'- -gGUCUGCGACucagagacgggcCGAUGUgcaCCGUCGAu -3'
miRNA:   3'- ugUAGACGCUGu-----------GCUACA---GGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 187399 0.71 0.925576
Target:  5'- -----cGCGGCGCGGUGUggCGUCGAGg -3'
miRNA:   3'- uguagaCGCUGUGCUACAg-GCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 101136 0.71 0.925576
Target:  5'- cGCGUCgcacgcccucgGCcGCACGAUGUCUGaCGAGg -3'
miRNA:   3'- -UGUAGa----------CGcUGUGCUACAGGCaGCUC- -5'
15743 3' -52.8 NC_004065.1 + 84469 0.71 0.914485
Target:  5'- -aGUCUGgucaCGACGCGAUcUCCGUCGGc -3'
miRNA:   3'- ugUAGAC----GCUGUGCUAcAGGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 190821 0.71 0.908591
Target:  5'- -gAUCUGCGACGCGAca-CCGUgcgCGAGa -3'
miRNA:   3'- ugUAGACGCUGUGCUacaGGCA---GCUC- -5'
15743 3' -52.8 NC_004065.1 + 155948 0.71 0.908591
Target:  5'- cCGUCgUGCuGCGCGAgucaUCCGUCGAGa -3'
miRNA:   3'- uGUAG-ACGcUGUGCUac--AGGCAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 153795 0.72 0.892198
Target:  5'- cGC-UCUGCGACGCGAUGUugaccaCCGauaucgucuauccggUCGAGu -3'
miRNA:   3'- -UGuAGACGCUGUGCUACA------GGC---------------AGCUC- -5'
15743 3' -52.8 NC_004065.1 + 44668 0.72 0.889541
Target:  5'- gGCGUCgucgGCGACgaaGCGAUGgUCGUCGAc -3'
miRNA:   3'- -UGUAGa---CGCUG---UGCUACaGGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 129636 0.72 0.889541
Target:  5'- cGCAUCUGCGGuCugGAacacagacUGgCCGUCGAc -3'
miRNA:   3'- -UGUAGACGCU-GugCU--------ACaGGCAGCUc -5'
15743 3' -52.8 NC_004065.1 + 147471 0.72 0.882744
Target:  5'- cACGUCUGCGgccGCAUGGUGgCCGUCcAGc -3'
miRNA:   3'- -UGUAGACGC---UGUGCUACaGGCAGcUC- -5'
15743 3' -52.8 NC_004065.1 + 79251 0.72 0.861072
Target:  5'- cACG-CUGaCGGCGCGAUGUCUgcggcuagaGUCGAGc -3'
miRNA:   3'- -UGUaGAC-GCUGUGCUACAGG---------CAGCUC- -5'
15743 3' -52.8 NC_004065.1 + 168946 0.74 0.807264
Target:  5'- gACAUCUGCGACAUgguGAccaacggccucucggUGUCCGUCa-- -3'
miRNA:   3'- -UGUAGACGCUGUG---CU---------------ACAGGCAGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.