miRNA: 3'- -UGUAGACGCUgU---GCUACAGGCAGcuc -5'
miRNA: 3'- -UGUAGaCGCUG-UGCUACAGGCaGCUC- -5'
miRNA: 3'- -UGUAGACGCUGUGCUACAGGCAGCUC- -5'
Results 41 - 43 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15743 | 3' | -52.8 | NC_004065.1 | + | 160337 | 0.77 | 0.61945 |
|
Target: 5'- aGCGUCUGCGGgGaguCGAUGUCCGUCu-- -3' miRNA: 3'- -UGUAGACGCUgU---GCUACAGGCAGcuc -5' |
|||||||
| 15743 | 3' | -52.8 | NC_004065.1 | + | 91700 | 0.8 | 0.50081 |
|
Target: 5'- gACAUC-GCGGCcACGAUGUCCG-CGAGc -3' miRNA: 3'- -UGUAGaCGCUG-UGCUACAGGCaGCUC- -5' |
|||||||
| 15743 | 3' | -52.8 | NC_004065.1 | + | 160577 | 1.08 | 0.010609 |
|
Target: 5'- gACAUCUGCGACACGAUGUCCGUCGAGu -3' miRNA: 3'- -UGUAGACGCUGUGCUACAGGCAGCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home