Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15743 | 3' | -52.8 | NC_004065.1 | + | 91700 | 0.8 | 0.50081 |
Target: 5'- gACAUC-GCGGCcACGAUGUCCG-CGAGc -3' miRNA: 3'- -UGUAGaCGCUG-UGCUACAGGCaGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 161933 | 0.67 | 0.987461 |
Target: 5'- cCGUCcguaGCGACuCGGUGcUCgCGUCGAGu -3' miRNA: 3'- uGUAGa---CGCUGuGCUAC-AG-GCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 99850 | 0.67 | 0.988901 |
Target: 5'- aGCGUCUGCGcCcCGAUcgccgCCGUgCGAGg -3' miRNA: 3'- -UGUAGACGCuGuGCUAca---GGCA-GCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 110189 | 0.67 | 0.988901 |
Target: 5'- gGCggCcGCGACGCGccGccgcCCGUCGAGa -3' miRNA: 3'- -UGuaGaCGCUGUGCuaCa---GGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 131980 | 0.66 | 0.991393 |
Target: 5'- aGCAUgUGgGACACGcaGUCCG-CGAu -3' miRNA: 3'- -UGUAgACgCUGUGCuaCAGGCaGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 186726 | 0.66 | 0.991393 |
Target: 5'- gGCAUgCUGaagGACAgGGUGUUCGUCGc- -3' miRNA: 3'- -UGUA-GACg--CUGUgCUACAGGCAGCuc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 119518 | 0.66 | 0.992461 |
Target: 5'- aGCAUggGCGGCGCGggGacgUgGUCGAGg -3' miRNA: 3'- -UGUAgaCGCUGUGCuaCa--GgCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 30621 | 0.66 | 0.993421 |
Target: 5'- -----aGCGACGCG-UGUCCGUCc-- -3' miRNA: 3'- uguagaCGCUGUGCuACAGGCAGcuc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 40313 | 0.66 | 0.995046 |
Target: 5'- -uGUUUGCGAUGcCGGUGUCguCGUgGAGg -3' miRNA: 3'- ugUAGACGCUGU-GCUACAG--GCAgCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 34262 | 0.67 | 0.982269 |
Target: 5'- -gGUCagcGCGACACGgcG-CCGUCGAu -3' miRNA: 3'- ugUAGa--CGCUGUGCuaCaGGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 44515 | 0.68 | 0.978002 |
Target: 5'- uCGUCcgGCGGCGCGAUGUUac-CGGGg -3' miRNA: 3'- uGUAGa-CGCUGUGCUACAGgcaGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 79251 | 0.72 | 0.861072 |
Target: 5'- cACG-CUGaCGGCGCGAUGUCUgcggcuagaGUCGAGc -3' miRNA: 3'- -UGUaGAC-GCUGUGCUACAGG---------CAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 147471 | 0.72 | 0.882744 |
Target: 5'- cACGUCUGCGgccGCAUGGUGgCCGUCcAGc -3' miRNA: 3'- -UGUAGACGC---UGUGCUACaGGCAGcUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 129636 | 0.72 | 0.889541 |
Target: 5'- cGCAUCUGCGGuCugGAacacagacUGgCCGUCGAc -3' miRNA: 3'- -UGUAGACGCU-GugCU--------ACaGGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 44668 | 0.72 | 0.889541 |
Target: 5'- gGCGUCgucgGCGACgaaGCGAUGgUCGUCGAc -3' miRNA: 3'- -UGUAGa---CGCUG---UGCUACaGGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 190821 | 0.71 | 0.908591 |
Target: 5'- -gAUCUGCGACGCGAca-CCGUgcgCGAGa -3' miRNA: 3'- ugUAGACGCUGUGCUacaGGCA---GCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 82842 | 0.69 | 0.957104 |
Target: 5'- aGCGUCUccaaucGCGACGgGGUuUCCGUCGcAGg -3' miRNA: 3'- -UGUAGA------CGCUGUgCUAcAGGCAGC-UC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 138213 | 0.69 | 0.959648 |
Target: 5'- gACGUCU-CGACcgcgcucuGCGAUGUcgaggcgcucgccgCCGUCGAGg -3' miRNA: 3'- -UGUAGAcGCUG--------UGCUACA--------------GGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 30899 | 0.68 | 0.970246 |
Target: 5'- gGCGUCgggGUcGCACucGUGUCCGUCGAc -3' miRNA: 3'- -UGUAGa--CGcUGUGc-UACAGGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 30462 | 0.66 | 0.995046 |
Target: 5'- gGCGUCUggaccGCGGCACGAUGgggcgcgcCCGgcugGAGg -3' miRNA: 3'- -UGUAGA-----CGCUGUGCUACa-------GGCag--CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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