Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15743 | 3' | -52.8 | NC_004065.1 | + | 39200 | 0.68 | 0.980221 |
Target: 5'- --uUCUcGCG-CACGGUGUCgCGUCGcAGa -3' miRNA: 3'- uguAGA-CGCuGUGCUACAG-GCAGC-UC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 160813 | 0.67 | 0.982269 |
Target: 5'- --uUCaGCGACGgGAUGUucaCCGUCGAc -3' miRNA: 3'- uguAGaCGCUGUgCUACA---GGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 159495 | 0.67 | 0.984153 |
Target: 5'- cGCGcCUGCaGGCGCGccUGcagcUCCGUCGAGa -3' miRNA: 3'- -UGUaGACG-CUGUGCu-AC----AGGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 132608 | 0.67 | 0.985881 |
Target: 5'- uACcgCUGCGGCAUGAUcUCCGagcugaucuUCGAc -3' miRNA: 3'- -UGuaGACGCUGUGCUAcAGGC---------AGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 33175 | 0.67 | 0.987461 |
Target: 5'- uGCA-CUGCGAgACGcUGUaCCGUCGc- -3' miRNA: 3'- -UGUaGACGCUgUGCuACA-GGCAGCuc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 194064 | 0.67 | 0.988901 |
Target: 5'- gGCAggagCaGCGGCGCGA-GUCCGaCGAc -3' miRNA: 3'- -UGUa---GaCGCUGUGCUaCAGGCaGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 29625 | 0.67 | 0.990209 |
Target: 5'- gACAUCUuccugGCGcagaACGAccacacGUCCGUCGAGa -3' miRNA: 3'- -UGUAGA-----CGCug--UGCUa-----CAGGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 37397 | 0.67 | 0.990209 |
Target: 5'- aACGUguacCUuCGACGCGGUGUCCGaCGGc -3' miRNA: 3'- -UGUA----GAcGCUGUGCUACAGGCaGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 138966 | 0.66 | 0.992562 |
Target: 5'- cGCGUCUGCGAgaccagucgccuCAuCGAggccggucugcagcaGUUCGUCGAGg -3' miRNA: 3'- -UGUAGACGCU------------GU-GCUa--------------CAGGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 27417 | 0.69 | 0.953282 |
Target: 5'- gGCGUaUGcCGuCACGAUGUCCGcccgCGAGu -3' miRNA: 3'- -UGUAgAC-GCuGUGCUACAGGCa---GCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 185617 | 0.7 | 0.949237 |
Target: 5'- -gAUCUGCGAC-UGAucuUGUaucCCGUCGAGu -3' miRNA: 3'- ugUAGACGCUGuGCU---ACA---GGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 160337 | 0.77 | 0.61945 |
Target: 5'- aGCGUCUGCGGgGaguCGAUGUCCGUCu-- -3' miRNA: 3'- -UGUAGACGCUgU---GCUACAGGCAGcuc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 168946 | 0.74 | 0.807264 |
Target: 5'- gACAUCUGCGACAUgguGAccaacggccucucggUGUCCGUCa-- -3' miRNA: 3'- -UGUAGACGCUGUG---CU---------------ACAGGCAGcuc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 153795 | 0.72 | 0.892198 |
Target: 5'- cGC-UCUGCGACGCGAUGUugaccaCCGauaucgucuauccggUCGAGu -3' miRNA: 3'- -UGuAGACGCUGUGCUACA------GGC---------------AGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 155948 | 0.71 | 0.908591 |
Target: 5'- cCGUCgUGCuGCGCGAgucaUCCGUCGAGa -3' miRNA: 3'- uGUAG-ACGcUGUGCUac--AGGCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 84469 | 0.71 | 0.914485 |
Target: 5'- -aGUCUGgucaCGACGCGAUcUCCGUCGGc -3' miRNA: 3'- ugUAGAC----GCUGUGCUAcAGGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 101136 | 0.71 | 0.925576 |
Target: 5'- cGCGUCgcacgcccucgGCcGCACGAUGUCUGaCGAGg -3' miRNA: 3'- -UGUAGa----------CGcUGUGCUACAGGCaGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 187399 | 0.71 | 0.925576 |
Target: 5'- -----cGCGGCGCGGUGUggCGUCGAGg -3' miRNA: 3'- uguagaCGCUGUGCUACAg-GCAGCUC- -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 134149 | 0.7 | 0.939539 |
Target: 5'- -gGUCUGCGACucagagacgggcCGAUGUgcaCCGUCGAu -3' miRNA: 3'- ugUAGACGCUGu-----------GCUACA---GGCAGCUc -5' |
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15743 | 3' | -52.8 | NC_004065.1 | + | 85680 | 0.7 | 0.940466 |
Target: 5'- gGCGUCUGCGGCGCcAUGuaccccaucaUCCGcuaCGAGg -3' miRNA: 3'- -UGUAGACGCUGUGcUAC----------AGGCa--GCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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