miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 3' -50.2 NC_004065.1 + 160976 0.66 0.999204
Target:  5'- ---uAUCCAGCaucuCCGgcgGCggCGGGCUGc -3'
miRNA:   3'- guuuUAGGUCG----GGCa--UGaaGCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 145809 0.66 0.999204
Target:  5'- ---cGUCgGGCCgG-ACUUCGAGCc- -3'
miRNA:   3'- guuuUAGgUCGGgCaUGAAGCUCGac -5'
15744 3' -50.2 NC_004065.1 + 203116 0.66 0.999028
Target:  5'- uCGGGGUCCGGC--GUGCggUCGAGCg- -3'
miRNA:   3'- -GUUUUAGGUCGggCAUGa-AGCUCGac -5'
15744 3' -50.2 NC_004065.1 + 4159 0.66 0.999009
Target:  5'- -cAAGUCCGgaccuccGCCCGUGgUUCGAGa-- -3'
miRNA:   3'- guUUUAGGU-------CGGGCAUgAAGCUCgac -5'
15744 3' -50.2 NC_004065.1 + 83671 0.66 0.998575
Target:  5'- uCGAuGUCCAGCCCGaucaggguguCgaCGAGUUGg -3'
miRNA:   3'- -GUUuUAGGUCGGGCau--------GaaGCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 149998 0.66 0.998575
Target:  5'- ----cUCCAGUCCGauCUUCGAcuuGCUGu -3'
miRNA:   3'- guuuuAGGUCGGGCauGAAGCU---CGAC- -5'
15744 3' -50.2 NC_004065.1 + 34069 0.66 0.998575
Target:  5'- gCGAGG-CCuGCUCGUAgUUCcuGAGCUGg -3'
miRNA:   3'- -GUUUUaGGuCGGGCAUgAAG--CUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 191261 0.66 0.998288
Target:  5'- --uGAUCCAGCCuCGUcucgaagugcACUUCGGGg-- -3'
miRNA:   3'- guuUUAGGUCGG-GCA----------UGAAGCUCgac -5'
15744 3' -50.2 NC_004065.1 + 213448 0.66 0.998288
Target:  5'- ---uAUCgGGCuCCGUAgUcUCGGGCUGa -3'
miRNA:   3'- guuuUAGgUCG-GGCAUgA-AGCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 167238 0.67 0.997954
Target:  5'- uCAGGAcgaaCGGCCCGUAUUUCGcggGGCa- -3'
miRNA:   3'- -GUUUUag--GUCGGGCAUGAAGC---UCGac -5'
15744 3' -50.2 NC_004065.1 + 62011 0.68 0.993757
Target:  5'- aCAGAA-CCGGCCCGagACgcgUCGAcggaGCUGu -3'
miRNA:   3'- -GUUUUaGGUCGGGCa-UGa--AGCU----CGAC- -5'
15744 3' -50.2 NC_004065.1 + 153190 0.68 0.993757
Target:  5'- aGGGAUCCcaGGCCCuGUACaucgCGAGCg- -3'
miRNA:   3'- gUUUUAGG--UCGGG-CAUGaa--GCUCGac -5'
15744 3' -50.2 NC_004065.1 + 65673 0.68 0.99218
Target:  5'- gAAGAUCCGacGCCCGaggacaucgcgcggGCgugCGAGCUGg -3'
miRNA:   3'- gUUUUAGGU--CGGGCa-------------UGaa-GCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 140675 0.68 0.99174
Target:  5'- gGAcAUCCgacAGCCCGUGCUgcUCGAGaCg- -3'
miRNA:   3'- gUUuUAGG---UCGGGCAUGA--AGCUC-Gac -5'
15744 3' -50.2 NC_004065.1 + 62929 0.69 0.984422
Target:  5'- aAGAAUCCGuuGUCCGggucggaguagACUUUGGGCUGg -3'
miRNA:   3'- gUUUUAGGU--CGGGCa----------UGAAGCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 22378 0.69 0.984422
Target:  5'- aGAGGgagCCGGCCgCGUGCggcaUgGAGCUGu -3'
miRNA:   3'- gUUUUa--GGUCGG-GCAUGa---AgCUCGAC- -5'
15744 3' -50.2 NC_004065.1 + 123356 0.69 0.984422
Target:  5'- gGAGAUCuaCAGCCCGUGCguaUCGGGa-- -3'
miRNA:   3'- gUUUUAG--GUCGGGCAUGa--AGCUCgac -5'
15744 3' -50.2 NC_004065.1 + 84223 0.7 0.975908
Target:  5'- uCGAAGUCCGGCCCGacgugcaugaggauCUgugCGAGCg- -3'
miRNA:   3'- -GUUUUAGGUCGGGCau------------GAa--GCUCGac -5'
15744 3' -50.2 NC_004065.1 + 60861 0.7 0.975652
Target:  5'- uCGAGA-CCGGCCCGUACgagugaUCGuGCg- -3'
miRNA:   3'- -GUUUUaGGUCGGGCAUGa-----AGCuCGac -5'
15744 3' -50.2 NC_004065.1 + 122863 0.7 0.972985
Target:  5'- ---cGUCCAGCCCcacCUgCGAGCUGc -3'
miRNA:   3'- guuuUAGGUCGGGcauGAaGCUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.