miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 5' -54.1 NC_004065.1 + 21959 0.65 0.988761
Target:  5'- gGCCAGggccgUCGucggcaggacgguGAGgGCCGCcacggccacGCCGACGGu -3'
miRNA:   3'- -CGGUCa----AGC-------------UUCaUGGCG---------CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 37459 0.66 0.987471
Target:  5'- aGCCGGUguaucAGaGCCGUGUCGGCAc -3'
miRNA:   3'- -CGGUCAagcu-UCaUGGCGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 132181 0.66 0.987471
Target:  5'- uGCgGGUUCGucGUACUGUaGCgGAaCAGg -3'
miRNA:   3'- -CGgUCAAGCuuCAUGGCG-CGgCU-GUC- -5'
15744 5' -54.1 NC_004065.1 + 201381 0.66 0.987471
Target:  5'- cGCCGG---GggGUGCCaCGUCGACGc -3'
miRNA:   3'- -CGGUCaagCuuCAUGGcGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 93244 0.66 0.987471
Target:  5'- gGCCGGUgggaUCGAcGUGCCGaccggaaucUCGACAGa -3'
miRNA:   3'- -CGGUCA----AGCUuCAUGGCgc-------GGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 109558 0.66 0.987471
Target:  5'- aGCgAGUUCuggucuGAGUucccGCCGC-CCGACAGc -3'
miRNA:   3'- -CGgUCAAGc-----UUCA----UGGCGcGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 157546 0.66 0.987471
Target:  5'- cCCGGUcuUCa----GCCGCGCCGACAc -3'
miRNA:   3'- cGGUCA--AGcuucaUGGCGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 214118 0.66 0.985907
Target:  5'- gGCCGG-UCGca----CGCGCCGACAa -3'
miRNA:   3'- -CGGUCaAGCuucaugGCGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 91263 0.66 0.985907
Target:  5'- cGCCA--UCGA----CCGCGCCGACc- -3'
miRNA:   3'- -CGGUcaAGCUucauGGCGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 213669 0.66 0.985907
Target:  5'- cGCUAGUagcgUCGAgAGaUACCGUGguagaaguggcaCCGACAGa -3'
miRNA:   3'- -CGGUCA----AGCU-UC-AUGGCGC------------GGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 41498 0.66 0.984198
Target:  5'- cGUCGGgaCGggG-AgCGCGCgGGCGGu -3'
miRNA:   3'- -CGGUCaaGCuuCaUgGCGCGgCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 139327 0.66 0.984198
Target:  5'- aCCAGacgCGGAucguguucGUGCCcaGCGCCGGCAa -3'
miRNA:   3'- cGGUCaa-GCUU--------CAUGG--CGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 81204 0.66 0.984198
Target:  5'- cCCAacgCGcAGUACCGCGCgGACu- -3'
miRNA:   3'- cGGUcaaGCuUCAUGGCGCGgCUGuc -5'
15744 5' -54.1 NC_004065.1 + 24216 0.66 0.984198
Target:  5'- -gCGGUuggCGAGGUuucGCuCGCGCCagGACAGg -3'
miRNA:   3'- cgGUCAa--GCUUCA---UG-GCGCGG--CUGUC- -5'
15744 5' -54.1 NC_004065.1 + 203474 0.66 0.9831
Target:  5'- gGCCGGgucCGcauAAGUaaagucgucguccugGCUGUGCCGGCGGg -3'
miRNA:   3'- -CGGUCaa-GC---UUCA---------------UGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 169856 0.66 0.982336
Target:  5'- gGCCAGcgUCGAccuGUGCauggcggGCGCCGAUc- -3'
miRNA:   3'- -CGGUCa-AGCUu--CAUGg------CGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 205162 0.66 0.982336
Target:  5'- uGCCAccgUCGAGGccGCCGuCGCCGcCAa -3'
miRNA:   3'- -CGGUca-AGCUUCa-UGGC-GCGGCuGUc -5'
15744 5' -54.1 NC_004065.1 + 51725 0.66 0.982336
Target:  5'- uCCAGUUCuguaaGGAGgagACCGUGCaUGACAa -3'
miRNA:   3'- cGGUCAAG-----CUUCa--UGGCGCG-GCUGUc -5'
15744 5' -54.1 NC_004065.1 + 161622 0.66 0.980314
Target:  5'- cCCGGggaUGggGUGCUGCGCC-ACGa -3'
miRNA:   3'- cGGUCaa-GCuuCAUGGCGCGGcUGUc -5'
15744 5' -54.1 NC_004065.1 + 77094 0.66 0.980314
Target:  5'- uCCucgUCGAuuUGCCGCGgCGGCAGc -3'
miRNA:   3'- cGGucaAGCUucAUGGCGCgGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.