miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 5' -54.1 NC_004065.1 + 158891 1.1 0.006012
Target:  5'- cGCCAGUUCGAAGUACCGCGCCGACAGc -3'
miRNA:   3'- -CGGUCAAGCUUCAUGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 78784 0.78 0.506805
Target:  5'- gGCCAGgaccuggacgcUCGAGGUcuuccCCGCGCCGGCGGu -3'
miRNA:   3'- -CGGUCa----------AGCUUCAu----GGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 120056 0.78 0.525931
Target:  5'- cGCCAGgacgucgUCGGAG-ACCGCGCCGGagAGg -3'
miRNA:   3'- -CGGUCa------AGCUUCaUGGCGCGGCUg-UC- -5'
15744 5' -54.1 NC_004065.1 + 61040 0.77 0.545322
Target:  5'- cGCCuc--CGAGGUccGCCGCGCUGACGGa -3'
miRNA:   3'- -CGGucaaGCUUCA--UGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 55903 0.75 0.664681
Target:  5'- uGCCGcaccucucaCGGAGU-CCGCGCCGGCAGa -3'
miRNA:   3'- -CGGUcaa------GCUUCAuGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 22143 0.75 0.694454
Target:  5'- uGCCGGUUCGAAucagaaccGUACCGCGauuCCcACAGg -3'
miRNA:   3'- -CGGUCAAGCUU--------CAUGGCGC---GGcUGUC- -5'
15744 5' -54.1 NC_004065.1 + 125057 0.75 0.698394
Target:  5'- cGUCAGUUCGcAGGU-CCGCGCCacgaaccgugugaugGACAGc -3'
miRNA:   3'- -CGGUCAAGC-UUCAuGGCGCGG---------------CUGUC- -5'
15744 5' -54.1 NC_004065.1 + 30758 0.74 0.733412
Target:  5'- cGCCGGgucguagaUGAAG-ACCGCGCuCGACGGa -3'
miRNA:   3'- -CGGUCaa------GCUUCaUGGCGCG-GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 37593 0.74 0.742963
Target:  5'- gGCCGGUUU-AGGUGCCGCGuCCGcuCGGg -3'
miRNA:   3'- -CGGUCAAGcUUCAUGGCGC-GGCu-GUC- -5'
15744 5' -54.1 NC_004065.1 + 129862 0.73 0.79802
Target:  5'- aGCCGucaggagguGUUCGAccuGUGCCGCGCgcugCGGCGGa -3'
miRNA:   3'- -CGGU---------CAAGCUu--CAUGGCGCG----GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 176759 0.72 0.804141
Target:  5'- cGCCGuuagacgugaauucGUUCGAcacgAUCGCGCCGGCGGa -3'
miRNA:   3'- -CGGU--------------CAAGCUuca-UGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 90907 0.72 0.840039
Target:  5'- cGCgAGcUCGGAGcagACCGCGUCGACc- -3'
miRNA:   3'- -CGgUCaAGCUUCa--UGGCGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 115068 0.71 0.863139
Target:  5'- aUCGGUUCuGGAGgccgGCgGCGCCGACuGa -3'
miRNA:   3'- cGGUCAAG-CUUCa---UGgCGCGGCUGuC- -5'
15744 5' -54.1 NC_004065.1 + 210591 0.71 0.873314
Target:  5'- cGCCAGcagCGcGGUgccuccggcaccuccGCCGaCGCCGGCGGg -3'
miRNA:   3'- -CGGUCaa-GCuUCA---------------UGGC-GCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 114858 0.7 0.884447
Target:  5'- gGCCAuccuggCGAcgacGGUGCCGCcgGCCGGCGGu -3'
miRNA:   3'- -CGGUcaa---GCU----UCAUGGCG--CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 732 0.7 0.897591
Target:  5'- cGCCGGUgacgcaacgCGAccagcGUGCCGCGUCG-CGGg -3'
miRNA:   3'- -CGGUCAa--------GCUu----CAUGGCGCGGCuGUC- -5'
15744 5' -54.1 NC_004065.1 + 35111 0.7 0.903833
Target:  5'- aGCCGGUguaUCGAGacgGCgGCGCCGugGu -3'
miRNA:   3'- -CGGUCA---AGCUUca-UGgCGCGGCugUc -5'
15744 5' -54.1 NC_004065.1 + 20346 0.7 0.903833
Target:  5'- cGCCGGUccUCGuucuUACgGCGUCGACGGc -3'
miRNA:   3'- -CGGUCA--AGCuuc-AUGgCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 99648 0.7 0.903833
Target:  5'- uGCCAGUagauggaGAAGccggcggcGCgGCGCCGACAGc -3'
miRNA:   3'- -CGGUCAag-----CUUCa-------UGgCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 6726 0.7 0.903833
Target:  5'- aGCCAuUUCGAucggGGUaGCCGCGgCGGCAc -3'
miRNA:   3'- -CGGUcAAGCU----UCA-UGGCGCgGCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.