miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 5' -54.1 NC_004065.1 + 194592 0.66 0.980314
Target:  5'- uCCGGcagUCGcGGUACCaCGUCGACAa -3'
miRNA:   3'- cGGUCa--AGCuUCAUGGcGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 200846 0.66 0.980314
Target:  5'- cCCGGU--GGAGUuCgGCGUCGACGGg -3'
miRNA:   3'- cGGUCAagCUUCAuGgCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 100857 0.67 0.978124
Target:  5'- aUCAGUUCGgcGUccagGCUGCGCCc-CAGg -3'
miRNA:   3'- cGGUCAAGCuuCA----UGGCGCGGcuGUC- -5'
15744 5' -54.1 NC_004065.1 + 196669 0.67 0.978124
Target:  5'- aUCGGcaCGAAGUACCGgCGucggaaccCCGACGGg -3'
miRNA:   3'- cGGUCaaGCUUCAUGGC-GC--------GGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 90649 0.67 0.978124
Target:  5'- -gCAG---GGAGUcCUGCGCCGACGGg -3'
miRNA:   3'- cgGUCaagCUUCAuGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 120601 0.67 0.977433
Target:  5'- gGCCGGgugcaCGAggaucgAGUagcucguggcguccGCCGCgGCCGACGGg -3'
miRNA:   3'- -CGGUCaa---GCU------UCA--------------UGGCG-CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 203836 0.67 0.975759
Target:  5'- ---cGUUCGAGGUcgaaagggaCGCGCCGGCAc -3'
miRNA:   3'- cgguCAAGCUUCAug-------GCGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 28210 0.67 0.975759
Target:  5'- uGCCAGUUCGAGG-ACC-UGaCCGAg-- -3'
miRNA:   3'- -CGGUCAAGCUUCaUGGcGC-GGCUguc -5'
15744 5' -54.1 NC_004065.1 + 174640 0.67 0.974253
Target:  5'- cGUCGGUUgCGggGUGCCGgaggacuggggucguCGCCGGg-- -3'
miRNA:   3'- -CGGUCAA-GCuuCAUGGC---------------GCGGCUguc -5'
15744 5' -54.1 NC_004065.1 + 103286 0.67 0.973213
Target:  5'- uUCAGguucUUCGAGGc-CCGCGgCGGCAGg -3'
miRNA:   3'- cGGUC----AAGCUUCauGGCGCgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 67657 0.67 0.970478
Target:  5'- cGUCGGUgaugUCGggGaGCgGCGgCGGCGGc -3'
miRNA:   3'- -CGGUCA----AGCuuCaUGgCGCgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 101241 0.67 0.970478
Target:  5'- cGCCA----GAGGUGCCGCcGgCGACGGc -3'
miRNA:   3'- -CGGUcaagCUUCAUGGCG-CgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 54149 0.67 0.970478
Target:  5'- --aGGUUCGGAGgaacCUGCGCaCGACAa -3'
miRNA:   3'- cggUCAAGCUUCau--GGCGCG-GCUGUc -5'
15744 5' -54.1 NC_004065.1 + 62590 0.67 0.970194
Target:  5'- aGCCAGUagGuuAGcGCCGCcgcccccGCCGGCGGc -3'
miRNA:   3'- -CGGUCAagCu-UCaUGGCG-------CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 149908 0.67 0.967549
Target:  5'- uGCCGGUUggaUGAGGgGCgCGCGgCuCGGCAGg -3'
miRNA:   3'- -CGGUCAA---GCUUCaUG-GCGC-G-GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 81595 0.67 0.967549
Target:  5'- aCCGuGUUgGAGGUGCCGaaGCCGGCc- -3'
miRNA:   3'- cGGU-CAAgCUUCAUGGCg-CGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 149704 0.68 0.961084
Target:  5'- cGCCGG---GggGccgcgGCCGCGCCGGCc- -3'
miRNA:   3'- -CGGUCaagCuuCa----UGGCGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 159697 0.68 0.961084
Target:  5'- cGCCAGUUCGGcgaAGUuccuguacgcgGCCGUGUgGGgGGu -3'
miRNA:   3'- -CGGUCAAGCU---UCA-----------UGGCGCGgCUgUC- -5'
15744 5' -54.1 NC_004065.1 + 133165 0.68 0.961084
Target:  5'- gGCCAGaaCGgcGc-CCGCGgCGACAGc -3'
miRNA:   3'- -CGGUCaaGCuuCauGGCGCgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 6947 0.68 0.957539
Target:  5'- cGCCG--UCGGAa-GCUGCGUCGACGGa -3'
miRNA:   3'- -CGGUcaAGCUUcaUGGCGCGGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.