miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 5' -54.1 NC_004065.1 + 732 0.7 0.897591
Target:  5'- cGCCGGUgacgcaacgCGAccagcGUGCCGCGUCG-CGGg -3'
miRNA:   3'- -CGGUCAa--------GCUu----CAUGGCGCGGCuGUC- -5'
15744 5' -54.1 NC_004065.1 + 763 0.68 0.95378
Target:  5'- aGCgCAG-UCGAAGgaaACCGUGUCGAaCGGu -3'
miRNA:   3'- -CG-GUCaAGCUUCa--UGGCGCGGCU-GUC- -5'
15744 5' -54.1 NC_004065.1 + 871 0.68 0.945602
Target:  5'- uGCCGGg-CGAGGgcGCCcCGCCGGCAu -3'
miRNA:   3'- -CGGUCaaGCUUCa-UGGcGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 6726 0.7 0.903833
Target:  5'- aGCCAuUUCGAucggGGUaGCCGCGgCGGCAc -3'
miRNA:   3'- -CGGUcAAGCU----UCA-UGGCGCgGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 6947 0.68 0.957539
Target:  5'- cGCCG--UCGGAa-GCUGCGUCGACGGa -3'
miRNA:   3'- -CGGUcaAGCUUcaUGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 20346 0.7 0.903833
Target:  5'- cGCCGGUccUCGuucuUACgGCGUCGACGGc -3'
miRNA:   3'- -CGGUCA--AGCuuc-AUGgCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 21959 0.65 0.988761
Target:  5'- gGCCAGggccgUCGucggcaggacgguGAGgGCCGCcacggccacGCCGACGGu -3'
miRNA:   3'- -CGGUCa----AGC-------------UUCaUGGCG---------CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 22143 0.75 0.694454
Target:  5'- uGCCGGUUCGAAucagaaccGUACCGCGauuCCcACAGg -3'
miRNA:   3'- -CGGUCAAGCUU--------CAUGGCGC---GGcUGUC- -5'
15744 5' -54.1 NC_004065.1 + 24216 0.66 0.984198
Target:  5'- -gCGGUuggCGAGGUuucGCuCGCGCCagGACAGg -3'
miRNA:   3'- cgGUCAa--GCUUCA---UG-GCGCGG--CUGUC- -5'
15744 5' -54.1 NC_004065.1 + 25842 0.69 0.921207
Target:  5'- -aCGGUcUCG-AGUACCGCGCUuGACAu -3'
miRNA:   3'- cgGUCA-AGCuUCAUGGCGCGG-CUGUc -5'
15744 5' -54.1 NC_004065.1 + 28210 0.67 0.975759
Target:  5'- uGCCAGUUCGAGG-ACC-UGaCCGAg-- -3'
miRNA:   3'- -CGGUCAAGCUUCaUGGcGC-GGCUguc -5'
15744 5' -54.1 NC_004065.1 + 30758 0.74 0.733412
Target:  5'- cGCCGGgucguagaUGAAG-ACCGCGCuCGACGGa -3'
miRNA:   3'- -CGGUCaa------GCUUCaUGGCGCG-GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 34098 0.69 0.941178
Target:  5'- aCCAGgugaUCGgcGaUAaaGCGCCGGCAGa -3'
miRNA:   3'- cGGUCa---AGCuuC-AUggCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 35111 0.7 0.903833
Target:  5'- aGCCGGUguaUCGAGacgGCgGCGCCGugGu -3'
miRNA:   3'- -CGGUCA---AGCUUca-UGgCGCGGCugUc -5'
15744 5' -54.1 NC_004065.1 + 37459 0.66 0.987471
Target:  5'- aGCCGGUguaucAGaGCCGUGUCGGCAc -3'
miRNA:   3'- -CGGUCAagcu-UCaUGGCGCGGCUGUc -5'
15744 5' -54.1 NC_004065.1 + 37593 0.74 0.742963
Target:  5'- gGCCGGUUU-AGGUGCCGCGuCCGcuCGGg -3'
miRNA:   3'- -CGGUCAAGcUUCAUGGCGC-GGCu-GUC- -5'
15744 5' -54.1 NC_004065.1 + 41498 0.66 0.984198
Target:  5'- cGUCGGgaCGggG-AgCGCGCgGGCGGu -3'
miRNA:   3'- -CGGUCaaGCuuCaUgGCGCGgCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 51725 0.66 0.982336
Target:  5'- uCCAGUUCuguaaGGAGgagACCGUGCaUGACAa -3'
miRNA:   3'- cGGUCAAG-----CUUCa--UGGCGCG-GCUGUc -5'
15744 5' -54.1 NC_004065.1 + 54149 0.67 0.970478
Target:  5'- --aGGUUCGGAGgaacCUGCGCaCGACAa -3'
miRNA:   3'- cggUCAAGCUUCau--GGCGCG-GCUGUc -5'
15744 5' -54.1 NC_004065.1 + 55903 0.75 0.664681
Target:  5'- uGCCGcaccucucaCGGAGU-CCGCGCCGGCAGa -3'
miRNA:   3'- -CGGUcaa------GCUUCAuGGCGCGGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.