miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15744 5' -54.1 NC_004065.1 + 67657 0.67 0.970478
Target:  5'- cGUCGGUgaugUCGggGaGCgGCGgCGGCGGc -3'
miRNA:   3'- -CGGUCA----AGCuuCaUGgCGCgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 77481 0.68 0.95378
Target:  5'- uCCAGUacaagcugcCGAAGaaGCCgGCGCCGGCGGa -3'
miRNA:   3'- cGGUCAa--------GCUUCa-UGG-CGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 189387 0.68 0.95378
Target:  5'- uGCC-GUUCGgcGUcACCGuCGCCGAgGa -3'
miRNA:   3'- -CGGuCAAGCuuCA-UGGC-GCGGCUgUc -5'
15744 5' -54.1 NC_004065.1 + 109410 0.68 0.957173
Target:  5'- cGCCucaa-GAGGUggcucuacaaccaGCCGCGCUGGCGGc -3'
miRNA:   3'- -CGGucaagCUUCA-------------UGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 149704 0.68 0.961084
Target:  5'- cGCCGG---GggGccgcgGCCGCGCCGGCc- -3'
miRNA:   3'- -CGGUCaagCuuCa----UGGCGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 81595 0.67 0.967549
Target:  5'- aCCGuGUUgGAGGUGCCGaaGCCGGCc- -3'
miRNA:   3'- cGGU-CAAgCUUCAUGGCg-CGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 149908 0.67 0.967549
Target:  5'- uGCCGGUUggaUGAGGgGCgCGCGgCuCGGCAGg -3'
miRNA:   3'- -CGGUCAA---GCUUCaUG-GCGC-G-GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 62590 0.67 0.970194
Target:  5'- aGCCAGUagGuuAGcGCCGCcgcccccGCCGGCGGc -3'
miRNA:   3'- -CGGUCAagCu-UCaUGGCG-------CGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 54149 0.67 0.970478
Target:  5'- --aGGUUCGGAGgaacCUGCGCaCGACAa -3'
miRNA:   3'- cggUCAAGCUUCau--GGCGCG-GCUGUc -5'
15744 5' -54.1 NC_004065.1 + 763 0.68 0.95378
Target:  5'- aGCgCAG-UCGAAGgaaACCGUGUCGAaCGGu -3'
miRNA:   3'- -CG-GUCaAGCUUCa--UGGCGCGGCU-GUC- -5'
15744 5' -54.1 NC_004065.1 + 152296 0.68 0.949802
Target:  5'- cCCAGUccugCGgcGgcgGCgGUGCCGGCGGg -3'
miRNA:   3'- cGGUCAa---GCuuCa--UGgCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 120888 0.68 0.949802
Target:  5'- gGUCAGggCGgcGUcUCGCGgCGACAGc -3'
miRNA:   3'- -CGGUCaaGCuuCAuGGCGCgGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 55903 0.75 0.664681
Target:  5'- uGCCGcaccucucaCGGAGU-CCGCGCCGGCAGa -3'
miRNA:   3'- -CGGUcaa------GCUUCAuGGCGCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 22143 0.75 0.694454
Target:  5'- uGCCGGUUCGAAucagaaccGUACCGCGauuCCcACAGg -3'
miRNA:   3'- -CGGUCAAGCUU--------CAUGGCGC---GGcUGUC- -5'
15744 5' -54.1 NC_004065.1 + 125057 0.75 0.698394
Target:  5'- cGUCAGUUCGcAGGU-CCGCGCCacgaaccgugugaugGACAGc -3'
miRNA:   3'- -CGGUCAAGC-UUCAuGGCGCGG---------------CUGUC- -5'
15744 5' -54.1 NC_004065.1 + 30758 0.74 0.733412
Target:  5'- cGCCGGgucguagaUGAAG-ACCGCGCuCGACGGa -3'
miRNA:   3'- -CGGUCaa------GCUUCaUGGCGCG-GCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 90907 0.72 0.840039
Target:  5'- cGCgAGcUCGGAGcagACCGCGUCGACc- -3'
miRNA:   3'- -CGgUCaAGCUUCa--UGGCGCGGCUGuc -5'
15744 5' -54.1 NC_004065.1 + 148728 0.69 0.921207
Target:  5'- uCCGGaUCGAGGacaGCCGCagcuCCGACAGg -3'
miRNA:   3'- cGGUCaAGCUUCa--UGGCGc---GGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 128768 0.69 0.941178
Target:  5'- cGgCAGcgUUGAGGgcGCCGuCGCCGGCGGc -3'
miRNA:   3'- -CgGUCa-AGCUUCa-UGGC-GCGGCUGUC- -5'
15744 5' -54.1 NC_004065.1 + 34098 0.69 0.941178
Target:  5'- aCCAGgugaUCGgcGaUAaaGCGCCGGCAGa -3'
miRNA:   3'- cGGUCa---AGCuuC-AUggCGCGGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.