miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15745 3' -56.1 NC_004065.1 + 126144 0.66 0.949859
Target:  5'- cGGCGUgcugCGAGAAGUCCGccaugaucGCGuGGUgCGCg -3'
miRNA:   3'- -UCGCA----GCUCUUCAGGU--------CGU-CCGaGUG- -5'
15745 3' -56.1 NC_004065.1 + 229011 0.66 0.949859
Target:  5'- cGCGgagCGAGAucgcgcacucGGccUCCcGCAGcGCUCACa -3'
miRNA:   3'- uCGCa--GCUCU----------UC--AGGuCGUC-CGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 200255 0.66 0.945644
Target:  5'- -cCGUCGGGGAGaUCAGUcGGCUCucGCa -3'
miRNA:   3'- ucGCAGCUCUUCaGGUCGuCCGAG--UG- -5'
15745 3' -56.1 NC_004065.1 + 198132 0.66 0.945644
Target:  5'- cGCGUCaGGcccgcucucGAGUacaCCAGCAGGCUguaCACg -3'
miRNA:   3'- uCGCAGcUC---------UUCA---GGUCGUCCGA---GUG- -5'
15745 3' -56.1 NC_004065.1 + 217063 0.66 0.945644
Target:  5'- gGGCGUugcCGAGAAGuuUCCAGCc-GCcgUCACg -3'
miRNA:   3'- -UCGCA---GCUCUUC--AGGUCGucCG--AGUG- -5'
15745 3' -56.1 NC_004065.1 + 141135 0.66 0.945644
Target:  5'- cGcCGUCGAGAAGuacUCCAGCuccauGGGCa--- -3'
miRNA:   3'- uC-GCAGCUCUUC---AGGUCG-----UCCGagug -5'
15745 3' -56.1 NC_004065.1 + 103707 0.66 0.941203
Target:  5'- gGGCGgCGGGGAGcgCCuGGCGGGCgugaucgugagCACg -3'
miRNA:   3'- -UCGCaGCUCUUCa-GG-UCGUCCGa----------GUG- -5'
15745 3' -56.1 NC_004065.1 + 157183 0.66 0.941203
Target:  5'- cGGCGUucuguccuguugUGGGggGUuagUCAGCAGGUggCGCa -3'
miRNA:   3'- -UCGCA------------GCUCuuCA---GGUCGUCCGa-GUG- -5'
15745 3' -56.1 NC_004065.1 + 137879 0.66 0.941203
Target:  5'- cAGCGUCGGGGugaucUUCAGCGcGCUCGu -3'
miRNA:   3'- -UCGCAGCUCUuc---AGGUCGUcCGAGUg -5'
15745 3' -56.1 NC_004065.1 + 191524 0.66 0.936533
Target:  5'- cAGCucgauccCGAGGuccacGUCCAGCAagggcGGCUCACu -3'
miRNA:   3'- -UCGca-----GCUCUu----CAGGUCGU-----CCGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 71486 0.66 0.931634
Target:  5'- gAGCGUgCGAGAGaugcgCCGGUcGcGCUCGCa -3'
miRNA:   3'- -UCGCA-GCUCUUca---GGUCGuC-CGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 165210 0.66 0.931634
Target:  5'- uGGCGggCGAGAuguGG-CgCAGCAcGCUCACg -3'
miRNA:   3'- -UCGCa-GCUCU---UCaG-GUCGUcCGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 33570 0.66 0.931634
Target:  5'- cAGCG-CGAGAAGUUCuaccgcguGGCGgacGGCaUCACg -3'
miRNA:   3'- -UCGCaGCUCUUCAGG--------UCGU---CCG-AGUG- -5'
15745 3' -56.1 NC_004065.1 + 96642 0.66 0.931634
Target:  5'- cGGCGgucgCGAGcucuuucucGGcgUCGGCGGGCUCGCc -3'
miRNA:   3'- -UCGCa---GCUCu--------UCa-GGUCGUCCGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 165396 0.67 0.921143
Target:  5'- cGCgGUCGAuggccuucugGAAGUCCgucucuagGGCGGGCgUCGCc -3'
miRNA:   3'- uCG-CAGCU----------CUUCAGG--------UCGUCCG-AGUG- -5'
15745 3' -56.1 NC_004065.1 + 152934 0.67 0.915552
Target:  5'- cAGCG-CGAGucGaucUCCAGCGGcaggcacaGCUCGCg -3'
miRNA:   3'- -UCGCaGCUCuuC---AGGUCGUC--------CGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 120678 0.67 0.909731
Target:  5'- cGCG-CGAGAcgaAGUacaugucucCCAGC-GGCUCGCc -3'
miRNA:   3'- uCGCaGCUCU---UCA---------GGUCGuCCGAGUG- -5'
15745 3' -56.1 NC_004065.1 + 107734 0.67 0.909731
Target:  5'- cGCGUCGAcGAucaGGUCCuGCAuGG-UCACu -3'
miRNA:   3'- uCGCAGCU-CU---UCAGGuCGU-CCgAGUG- -5'
15745 3' -56.1 NC_004065.1 + 211573 0.67 0.897407
Target:  5'- -cCGUCGAGGAaUCCGGCggcuguccgAGGuCUCGCu -3'
miRNA:   3'- ucGCAGCUCUUcAGGUCG---------UCC-GAGUG- -5'
15745 3' -56.1 NC_004065.1 + 138438 0.67 0.897407
Target:  5'- uGCGuccUCGAGggGUCgGgGCGGGCgagCAg -3'
miRNA:   3'- uCGC---AGCUCuuCAGgU-CGUCCGa--GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.