miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15745 5' -65.6 NC_004065.1 + 61928 0.66 0.572659
Target:  5'- --uCGUC-CCUgaCGGGgaGCCCGGCg -3'
miRNA:   3'- uacGCAGcGGAg-GCCCgaCGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 130071 0.66 0.569853
Target:  5'- -gGCGUuucgcagcagcagcCGCCgCCGcGGCgGUCCGGCg -3'
miRNA:   3'- uaCGCA--------------GCGGaGGC-CCGaCGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 209321 0.66 0.554024
Target:  5'- gGUGcCGUCGUgugCUaCUGGGgaCUGCCCGGUg -3'
miRNA:   3'- -UAC-GCAGCG---GA-GGCCC--GACGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 83219 0.66 0.554024
Target:  5'- cGUGCG-CGCCgCCGGGaggagcauaCUGCaCGGCg -3'
miRNA:   3'- -UACGCaGCGGaGGCCC---------GACGgGCCGa -5'
15745 5' -65.6 NC_004065.1 + 199529 0.66 0.544773
Target:  5'- cGUGCG-CGCagCCGGGCgccuccaGCCgGGCg -3'
miRNA:   3'- -UACGCaGCGgaGGCCCGa------CGGgCCGa -5'
15745 5' -65.6 NC_004065.1 + 31519 0.66 0.535573
Target:  5'- cGUGCGacgUGCCgCgGGGCUacCCCGGCa -3'
miRNA:   3'- -UACGCa--GCGGaGgCCCGAc-GGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 191946 0.66 0.535573
Target:  5'- -aGCuccaGCCUCaCGGGCcuguUGUCCGGCg -3'
miRNA:   3'- uaCGcag-CGGAG-GCCCG----ACGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 195648 0.66 0.526428
Target:  5'- -cGCcUCGCCUCCcGGCaGCCgagCGGCg -3'
miRNA:   3'- uaCGcAGCGGAGGcCCGaCGG---GCCGa -5'
15745 5' -65.6 NC_004065.1 + 18530 0.67 0.517342
Target:  5'- gGUGCacgggaUCGUCaCCGGGC-GCCUGGCUc -3'
miRNA:   3'- -UACGc-----AGCGGaGGCCCGaCGGGCCGA- -5'
15745 5' -65.6 NC_004065.1 + 3870 0.67 0.517342
Target:  5'- -aGCGUCGCCagaaagCUGGGCUGUgCGauGCc -3'
miRNA:   3'- uaCGCAGCGGa-----GGCCCGACGgGC--CGa -5'
15745 5' -65.6 NC_004065.1 + 170306 0.67 0.490479
Target:  5'- -cGCGacggUCGCCgugcgCCGcGGCcGCUCGGCg -3'
miRNA:   3'- uaCGC----AGCGGa----GGC-CCGaCGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 64150 0.67 0.485183
Target:  5'- cGUGCGgccUCGCCUUCGGGaccgugagagaccGUCCGGCc -3'
miRNA:   3'- -UACGC---AGCGGAGGCCCga-----------CGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 78926 0.67 0.481669
Target:  5'- -cGuCGUCGCCgagCuCGGGCgccaccagGCCCGcGCa -3'
miRNA:   3'- uaC-GCAGCGGa--G-GCCCGa-------CGGGC-CGa -5'
15745 5' -65.6 NC_004065.1 + 192663 0.67 0.472066
Target:  5'- aAUGCGUCGCgucgggguucuucCUCUgcgguGGGCUGCuCCGGa- -3'
miRNA:   3'- -UACGCAGCG-------------GAGG-----CCCGACG-GGCCga -5'
15745 5' -65.6 NC_004065.1 + 119121 0.67 0.464283
Target:  5'- -gGCGUCGaCCUCCGGGUaggaGUaaucgaCGGCg -3'
miRNA:   3'- uaCGCAGC-GGAGGCCCGa---CGg-----GCCGa -5'
15745 5' -65.6 NC_004065.1 + 97702 0.68 0.438836
Target:  5'- cUGcCGcCGCCgcCCGGGCUGUCCaggaGGCa -3'
miRNA:   3'- uAC-GCaGCGGa-GGCCCGACGGG----CCGa -5'
15745 5' -65.6 NC_004065.1 + 71955 0.69 0.398264
Target:  5'- -gGCGaCGCCgccgguggagCCGGGCaGCCCGGa- -3'
miRNA:   3'- uaCGCaGCGGa---------GGCCCGaCGGGCCga -5'
15745 5' -65.6 NC_004065.1 + 109883 0.71 0.304704
Target:  5'- -gGCGUCGCCgcggccgcgUCGGGggGuCCCGGCUc -3'
miRNA:   3'- uaCGCAGCGGa--------GGCCCgaC-GGGCCGA- -5'
15745 5' -65.6 NC_004065.1 + 165101 0.71 0.29825
Target:  5'- -cGcCGUCGUCUCUGaGGCggcgucccGCCCGGCg -3'
miRNA:   3'- uaC-GCAGCGGAGGC-CCGa-------CGGGCCGa -5'
15745 5' -65.6 NC_004065.1 + 137900 0.71 0.272896
Target:  5'- -cGCGcUCGUCUUCGGGCUGCucucguuguagucCCGGUa -3'
miRNA:   3'- uaCGC-AGCGGAGGCCCGACG-------------GGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.