miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 55442 0.66 0.841191
Target:  5'- gGUCUUCgaGUCGGCGCUG--GGGGAAGg -3'
miRNA:   3'- -UAGGAGg-CGGCCGUGGCugCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 162161 0.66 0.841191
Target:  5'- gAUCggCCGCCGGCugCGGCGcAGc--- -3'
miRNA:   3'- -UAGgaGGCGGCCGugGCUGC-UCcuuc -5'
15746 3' -60.2 NC_004065.1 + 138815 0.66 0.841191
Target:  5'- cUUCUCCGgCGGCGCCGAUGc----- -3'
miRNA:   3'- uAGGAGGCgGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 143715 0.66 0.841191
Target:  5'- -aCCag-GUCGGCGCCGGCGAGcGAGa -3'
miRNA:   3'- uaGGaggCGGCCGUGGCUGCUCcUUC- -5'
15746 3' -60.2 NC_004065.1 + 113485 0.66 0.841191
Target:  5'- aAUCCUCCacgGUCGGCACCguacgucucuuuGACGccGAGGc -3'
miRNA:   3'- -UAGGAGG---CGGCCGUGG------------CUGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 123753 0.66 0.833404
Target:  5'- aGUUCUgCGCCaGCACCcuggucgaguacGACGAGGuGGa -3'
miRNA:   3'- -UAGGAgGCGGcCGUGG------------CUGCUCCuUC- -5'
15746 3' -60.2 NC_004065.1 + 133503 0.66 0.833404
Target:  5'- cUCCUCggacucguCGUCGuccuCCGACGAGGAGGa -3'
miRNA:   3'- uAGGAG--------GCGGCcgu-GGCUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 169716 0.66 0.833404
Target:  5'- -gCgUCCGUCGGCugCGG-GAcGGGAGa -3'
miRNA:   3'- uaGgAGGCGGCCGugGCUgCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 114953 0.66 0.832616
Target:  5'- aGUCggcgCCGCCGGCcuccagaACCGAUGAGuucGGAGa -3'
miRNA:   3'- -UAGga--GGCGGCCG-------UGGCUGCUC---CUUC- -5'
15746 3' -60.2 NC_004065.1 + 42082 0.66 0.831036
Target:  5'- -aCCUCgcugaugugcgcguCGCCGGCGCCGACGuacGuGAc- -3'
miRNA:   3'- uaGGAG--------------GCGGCCGUGGCUGCu--C-CUuc -5'
15746 3' -60.2 NC_004065.1 + 63076 0.66 0.825453
Target:  5'- ----gUCGCCGGuCGCCGGCGAGcGAc- -3'
miRNA:   3'- uaggaGGCGGCC-GUGGCUGCUC-CUuc -5'
15746 3' -60.2 NC_004065.1 + 137491 0.66 0.825453
Target:  5'- uUCCcgugCCGCCGGgGC--ACGAGGAAc -3'
miRNA:   3'- uAGGa---GGCGGCCgUGgcUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 106386 0.66 0.825453
Target:  5'- gAUCCUgaCGCCGGUgucgGCCGACcuGGAGu -3'
miRNA:   3'- -UAGGAg-GCGGCCG----UGGCUGcuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 34922 0.66 0.825453
Target:  5'- ----aCCGCCGGCAgCUGACGccccuGGggGu -3'
miRNA:   3'- uaggaGGCGGCCGU-GGCUGCu----CCuuC- -5'
15746 3' -60.2 NC_004065.1 + 154674 0.66 0.817344
Target:  5'- cUCCUCU-CgGGCACCG-UGAGGAc- -3'
miRNA:   3'- uAGGAGGcGgCCGUGGCuGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 197486 0.66 0.817344
Target:  5'- ----aCCGCCGGCG-CGACGGGGccGu -3'
miRNA:   3'- uaggaGGCGGCCGUgGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 66775 0.66 0.817344
Target:  5'- -gCCggcgCCGCCGcuGCGCCGACGAaacaugagcGGAc- -3'
miRNA:   3'- uaGGa---GGCGGC--CGUGGCUGCU---------CCUuc -5'
15746 3' -60.2 NC_004065.1 + 174111 0.66 0.816525
Target:  5'- -aCUUCUGCCGGCGCgGACuccgugaGAGGu-- -3'
miRNA:   3'- uaGGAGGCGGCCGUGgCUG-------CUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 109824 0.66 0.809085
Target:  5'- -cCCUCguCGCCGuccuGCugCGGCGGGGGGc -3'
miRNA:   3'- uaGGAG--GCGGC----CGugGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 30150 0.66 0.809085
Target:  5'- -aCCggCCGCucgugcugugCGGCACCGACGAGu--- -3'
miRNA:   3'- uaGGa-GGCG----------GCCGUGGCUGCUCcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.