Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15746 | 3' | -60.2 | NC_004065.1 | + | 156912 | 1.07 | 0.002734 |
Target: 5'- gAUCCUCCGCCGGCACCGACGAGGAAGa -3' miRNA: 3'- -UAGGAGGCGGCCGUGGCUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 77719 | 0.74 | 0.396126 |
Target: 5'- cGUCC-CCGCCGGCACCGcCGccgccgcAGGAc- -3' miRNA: 3'- -UAGGaGGCGGCCGUGGCuGC-------UCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 79763 | 0.73 | 0.455667 |
Target: 5'- gAUCCUCUGg-GGCACC-ACGAGGGAGa -3' miRNA: 3'- -UAGGAGGCggCCGUGGcUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 210615 | 0.73 | 0.42151 |
Target: 5'- -aCCUCCGCCGaCGCCGGCGGGu--- -3' miRNA: 3'- uaGGAGGCGGCcGUGGCUGCUCcuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 118760 | 0.73 | 0.438398 |
Target: 5'- uUCuCUCgGUcaCGGCGCCGACGAGGcAGa -3' miRNA: 3'- uAG-GAGgCG--GCCGUGGCUGCUCCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 201295 | 0.72 | 0.509536 |
Target: 5'- -cCCUCCGgCGGC-CgGGgGAGGAGGa -3' miRNA: 3'- uaGGAGGCgGCCGuGgCUgCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 152299 | 0.72 | 0.464438 |
Target: 5'- aGUCCUgCGgCGGCggcgguGCCGGCGGGGAc- -3' miRNA: 3'- -UAGGAgGCgGCCG------UGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 151208 | 0.72 | 0.509536 |
Target: 5'- -gCCUCCugaucaCCGGUACCGccggcGCGGGGAAGa -3' miRNA: 3'- uaGGAGGc-----GGCCGUGGC-----UGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 73112 | 0.71 | 0.51878 |
Target: 5'- uUCCU-CGUCGGUGCCGGCgGAGGAu- -3' miRNA: 3'- uAGGAgGCGGCCGUGGCUG-CUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 133357 | 0.71 | 0.545944 |
Target: 5'- gAUCCUCCGUCGGgcgagccCGCCGACGccGAGa -3' miRNA: 3'- -UAGGAGGCGGCC-------GUGGCUGCucCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 112007 | 0.71 | 0.52809 |
Target: 5'- gAUCCUCCGUCGGgAggagGACGAGGAGc -3' miRNA: 3'- -UAGGAGGCGGCCgUgg--CUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 63882 | 0.71 | 0.556368 |
Target: 5'- -gCCgcugCCGCCGGCGCCGACGu----- -3' miRNA: 3'- uaGGa---GGCGGCCGUGGCUGCuccuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 76370 | 0.71 | 0.556368 |
Target: 5'- cUCCaUCgCGCCGGCGCCGcCGcGGAu- -3' miRNA: 3'- uAGG-AG-GCGGCCGUGGCuGCuCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 164810 | 0.71 | 0.52809 |
Target: 5'- -gCCaCCGCCGGCacucugGCCGuuucCGAGGAGGa -3' miRNA: 3'- uaGGaGGCGGCCG------UGGCu---GCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 152531 | 0.7 | 0.585068 |
Target: 5'- --gCUCCGCCGGCGCCGGCu------ -3' miRNA: 3'- uagGAGGCGGCCGUGGCUGcuccuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 99150 | 0.7 | 0.575463 |
Target: 5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3' miRNA: 3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 148605 | 0.7 | 0.585068 |
Target: 5'- aGUUCUCCGCCGGg---GACGAGGGAc -3' miRNA: 3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 82545 | 0.7 | 0.598564 |
Target: 5'- uUCC-CCGCCGGCACCacauggugcuuccaGCGGGGcGAGa -3' miRNA: 3'- uAGGaGGCGGCCGUGGc-------------UGCUCC-UUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 164711 | 0.7 | 0.585068 |
Target: 5'- -gCCgCCGCCGGUcccACCacGCGGGGAAGg -3' miRNA: 3'- uaGGaGGCGGCCG---UGGc-UGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 141618 | 0.7 | 0.575463 |
Target: 5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3' miRNA: 3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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