miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 55384 0.7 0.61404
Target:  5'- aGUCCUCCGgcacCCGcGCaACCGACG-GGAGu -3'
miRNA:   3'- -UAGGAGGC----GGC-CG-UGGCUGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 147506 0.69 0.633426
Target:  5'- cGUCaUCCGCauguucggGGcCACCGAUGAGGggGu -3'
miRNA:   3'- -UAGgAGGCGg-------CC-GUGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 97940 0.69 0.643121
Target:  5'- uUCCUCCGgCGGCAgCG-CGucGAAGu -3'
miRNA:   3'- uAGGAGGCgGCCGUgGCuGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 2988 0.69 0.652809
Target:  5'- -aCCUCU--CGGCGCCGACGAaccaucGGGAGg -3'
miRNA:   3'- uaGGAGGcgGCCGUGGCUGCU------CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 111304 0.69 0.662481
Target:  5'- -aCCUCCGCCGGCAaggaucucgUCGGCGucaucuGGGu- -3'
miRNA:   3'- uaGGAGGCGGCCGU---------GGCUGCu-----CCUuc -5'
15746 3' -60.2 NC_004065.1 + 115997 0.69 0.662481
Target:  5'- cUCgUCCGCCGacguGCGCCG-CGGGGGc- -3'
miRNA:   3'- uAGgAGGCGGC----CGUGGCuGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 483 0.69 0.681753
Target:  5'- -gCCUCCggGCCGcGCGCCGcguccGCG-GGAAGg -3'
miRNA:   3'- uaGGAGG--CGGC-CGUGGC-----UGCuCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 126274 0.69 0.681753
Target:  5'- gGUCCggaggccCCGCCGcGCgaACCGACGccgaAGGAGGc -3'
miRNA:   3'- -UAGGa------GGCGGC-CG--UGGCUGC----UCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 127482 0.69 0.681753
Target:  5'- -aCC-CCGgCGcCACCGACGAGGAc- -3'
miRNA:   3'- uaGGaGGCgGCcGUGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 116090 0.68 0.691338
Target:  5'- cUCgUCgGCCGaGCucauCCGGCGAGGGGu -3'
miRNA:   3'- uAGgAGgCGGC-CGu---GGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 99342 0.68 0.691338
Target:  5'- cUCCUCCGCCuccucGC-CCGACGAGcGuuGg -3'
miRNA:   3'- uAGGAGGCGGc----CGuGGCUGCUC-CuuC- -5'
15746 3' -60.2 NC_004065.1 + 180358 0.68 0.691338
Target:  5'- cUgCUCCGgCGGCACCGccACG-GGAAa -3'
miRNA:   3'- uAgGAGGCgGCCGUGGC--UGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 82784 0.68 0.691338
Target:  5'- -gCgUCCGgUGGCGCCGACccauccggggguGGGGAAGu -3'
miRNA:   3'- uaGgAGGCgGCCGUGGCUG------------CUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 28990 0.68 0.700878
Target:  5'- -gUCUCCGgCGGCGgUGGCGAGGc-- -3'
miRNA:   3'- uaGGAGGCgGCCGUgGCUGCUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 143149 0.68 0.700878
Target:  5'- -aCCUgCGUCGGUGaugaCGACGAGGAc- -3'
miRNA:   3'- uaGGAgGCGGCCGUg---GCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 86151 0.68 0.710367
Target:  5'- uUCUUCaCGCCGGCGCCGuucuUGGcGGAu- -3'
miRNA:   3'- uAGGAG-GCGGCCGUGGCu---GCU-CCUuc -5'
15746 3' -60.2 NC_004065.1 + 187205 0.68 0.719795
Target:  5'- -cCCUCCGCaCGGgGgagGAUGAGGAAGa -3'
miRNA:   3'- uaGGAGGCG-GCCgUgg-CUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 102889 0.68 0.729157
Target:  5'- -gCCgCCGCCGGUagcgccgccGCCGcgAUGGGGGAGa -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGC--UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 131459 0.68 0.729157
Target:  5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3'
miRNA:   3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 90111 0.68 0.738443
Target:  5'- uUCaacCCGCUGGCGCCGcCGGccGGAGGc -3'
miRNA:   3'- uAGga-GGCGGCCGUGGCuGCU--CCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.