miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 67680 0.68 0.738443
Target:  5'- uUCCcggUCCGaUCGGC-UCGAUGAGGggGu -3'
miRNA:   3'- uAGG---AGGC-GGCCGuGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 153651 0.68 0.738443
Target:  5'- cUCaUCCGCggCGGCGCCGGCGcgauGGAGa -3'
miRNA:   3'- uAGgAGGCG--GCCGUGGCUGCu---CCUUc -5'
15746 3' -60.2 NC_004065.1 + 190742 0.67 0.747646
Target:  5'- cUCCccaUUCGCCGGUuCUGAUGGGGAc- -3'
miRNA:   3'- uAGG---AGGCGGCCGuGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 33657 0.67 0.747646
Target:  5'- uUCgaCCGuCCGGCGC--GCGGGGAGGg -3'
miRNA:   3'- uAGgaGGC-GGCCGUGgcUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 107743 0.67 0.755851
Target:  5'- gAUCCUCgGCCGGCggauGCCccaggucggugucGGCGcGGGAGc -3'
miRNA:   3'- -UAGGAGgCGGCCG----UGG-------------CUGCuCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 111713 0.67 0.756758
Target:  5'- -gUC-CCGCUGGCgacgagaacGCCGAUGAGGAc- -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 172069 0.67 0.756758
Target:  5'- gGUCCUCCGUgGcCGCCGcgguucgaGCGGGGGAc -3'
miRNA:   3'- -UAGGAGGCGgCcGUGGC--------UGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 181220 0.67 0.774678
Target:  5'- -gCCguUCgGCCGGCugCGugGAcGGGAc -3'
miRNA:   3'- uaGG--AGgCGGCCGugGCugCU-CCUUc -5'
15746 3' -60.2 NC_004065.1 + 120583 0.67 0.774678
Target:  5'- -aCCUCCggcGCCGGUcucgGCCGggugcACGAGGAu- -3'
miRNA:   3'- uaGGAGG---CGGCCG----UGGC-----UGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 122935 0.67 0.774678
Target:  5'- -aCCcgaCGCCGGCGuuCCaGACGAGGAu- -3'
miRNA:   3'- uaGGag-GCGGCCGU--GG-CUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 212759 0.67 0.774678
Target:  5'- -aCCUCCGgCGGUGaaGAaGAGGAGGu -3'
miRNA:   3'- uaGGAGGCgGCCGUggCUgCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 97921 0.67 0.774678
Target:  5'- -aCCUCgaaccgccgcgCGuCCGGCACCGGCGuGGcAGc -3'
miRNA:   3'- uaGGAG-----------GC-GGCCGUGGCUGCuCCuUC- -5'
15746 3' -60.2 NC_004065.1 + 139790 0.67 0.774678
Target:  5'- -gCCUUCGCCGaCGCCGACcucuuGGGAAa -3'
miRNA:   3'- uaGGAGGCGGCcGUGGCUGc----UCCUUc -5'
15746 3' -60.2 NC_004065.1 + 164202 0.67 0.780845
Target:  5'- -aUCUCCGCCGGCAUCGcguucACGAucgccucgauccgcGGGAu -3'
miRNA:   3'- uaGGAGGCGGCCGUGGC-----UGCU--------------CCUUc -5'
15746 3' -60.2 NC_004065.1 + 147470 0.67 0.782596
Target:  5'- -gCC-CCGCUggaagcaccauguGGUGCCGGCGGGGAa- -3'
miRNA:   3'- uaGGaGGCGG-------------CCGUGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 25481 0.67 0.78347
Target:  5'- -aCCUcCCGCC-GC-CCGACGAGGc-- -3'
miRNA:   3'- uaGGA-GGCGGcCGuGGCUGCUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 34369 0.67 0.78347
Target:  5'- -cCCUCCGCCgcucGGCuGCCGG-GAGGcGAGg -3'
miRNA:   3'- uaGGAGGCGG----CCG-UGGCUgCUCC-UUC- -5'
15746 3' -60.2 NC_004065.1 + 152929 0.67 0.78347
Target:  5'- -gCUgCCGCCgcGGCAaaUCGACGAGGAGa -3'
miRNA:   3'- uaGGaGGCGG--CCGU--GGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 197125 0.67 0.788687
Target:  5'- -gCCUCCGacccccgacaggaCGGCAUCucgGACGAGGAGc -3'
miRNA:   3'- uaGGAGGCg------------GCCGUGG---CUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 153280 0.67 0.788687
Target:  5'- --aCgaggCCGCCGGCGCCGcgcccguccccgcCGAGGAGu -3'
miRNA:   3'- uagGa---GGCGGCCGUGGCu------------GCUCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.