Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15746 | 3' | -60.2 | NC_004065.1 | + | 109824 | 0.66 | 0.809085 |
Target: 5'- -cCCUCguCGCCGuccuGCugCGGCGGGGGGc -3' miRNA: 3'- uaGGAG--GCGGC----CGugGCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 100892 | 0.66 | 0.800681 |
Target: 5'- cUCCUCCGCCGcGCACUGcugauCGuccGGcAGg -3' miRNA: 3'- uAGGAGGCGGC-CGUGGCu----GCu--CCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 200367 | 0.66 | 0.800681 |
Target: 5'- cGUCCUCUu----CGCCGGCGAGGAGGg -3' miRNA: 3'- -UAGGAGGcggccGUGGCUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 146810 | 0.67 | 0.79214 |
Target: 5'- cUCCUCCcGgCGGCGCgcACGGGGGAc -3' miRNA: 3'- uAGGAGG-CgGCCGUGgcUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 99615 | 0.67 | 0.79214 |
Target: 5'- --aUUCCGCCGGaCGgucgcgauacCCGGCGGGGAc- -3' miRNA: 3'- uagGAGGCGGCC-GU----------GGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 141699 | 0.67 | 0.79214 |
Target: 5'- uUUCUCCGCUcuguuuucaGGCG-CGACGAGGccGAGg -3' miRNA: 3'- uAGGAGGCGG---------CCGUgGCUGCUCC--UUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 197125 | 0.67 | 0.788687 |
Target: 5'- -gCCUCCGacccccgacaggaCGGCAUCucgGACGAGGAGc -3' miRNA: 3'- uaGGAGGCg------------GCCGUGG---CUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 153280 | 0.67 | 0.788687 |
Target: 5'- --aCgaggCCGCCGGCGCCGcgcccguccccgcCGAGGAGu -3' miRNA: 3'- uagGa---GGCGGCCGUGGCu------------GCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 152929 | 0.67 | 0.78347 |
Target: 5'- -gCUgCCGCCgcGGCAaaUCGACGAGGAGa -3' miRNA: 3'- uaGGaGGCGG--CCGU--GGCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 25481 | 0.67 | 0.78347 |
Target: 5'- -aCCUcCCGCC-GC-CCGACGAGGc-- -3' miRNA: 3'- uaGGA-GGCGGcCGuGGCUGCUCCuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 34369 | 0.67 | 0.78347 |
Target: 5'- -cCCUCCGCCgcucGGCuGCCGG-GAGGcGAGg -3' miRNA: 3'- uaGGAGGCGG----CCG-UGGCUgCUCC-UUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 147470 | 0.67 | 0.782596 |
Target: 5'- -gCC-CCGCUggaagcaccauguGGUGCCGGCGGGGAa- -3' miRNA: 3'- uaGGaGGCGG-------------CCGUGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 164202 | 0.67 | 0.780845 |
Target: 5'- -aUCUCCGCCGGCAUCGcguucACGAucgccucgauccgcGGGAu -3' miRNA: 3'- uaGGAGGCGGCCGUGGC-----UGCU--------------CCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 122935 | 0.67 | 0.774678 |
Target: 5'- -aCCcgaCGCCGGCGuuCCaGACGAGGAu- -3' miRNA: 3'- uaGGag-GCGGCCGU--GG-CUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 212759 | 0.67 | 0.774678 |
Target: 5'- -aCCUCCGgCGGUGaaGAaGAGGAGGu -3' miRNA: 3'- uaGGAGGCgGCCGUggCUgCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 97921 | 0.67 | 0.774678 |
Target: 5'- -aCCUCgaaccgccgcgCGuCCGGCACCGGCGuGGcAGc -3' miRNA: 3'- uaGGAG-----------GC-GGCCGUGGCUGCuCCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 139790 | 0.67 | 0.774678 |
Target: 5'- -gCCUUCGCCGaCGCCGACcucuuGGGAAa -3' miRNA: 3'- uaGGAGGCGGCcGUGGCUGc----UCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 181220 | 0.67 | 0.774678 |
Target: 5'- -gCCguUCgGCCGGCugCGugGAcGGGAc -3' miRNA: 3'- uaGG--AGgCGGCCGugGCugCU-CCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 120583 | 0.67 | 0.774678 |
Target: 5'- -aCCUCCggcGCCGGUcucgGCCGggugcACGAGGAu- -3' miRNA: 3'- uaGGAGG---CGGCCG----UGGC-----UGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 111713 | 0.67 | 0.756758 |
Target: 5'- -gUC-CCGCUGGCgacgagaacGCCGAUGAGGAc- -3' miRNA: 3'- uaGGaGGCGGCCG---------UGGCUGCUCCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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