Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15746 | 3' | -60.2 | NC_004065.1 | + | 172069 | 0.67 | 0.756758 |
Target: 5'- gGUCCUCCGUgGcCGCCGcgguucgaGCGGGGGAc -3' miRNA: 3'- -UAGGAGGCGgCcGUGGC--------UGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 107743 | 0.67 | 0.755851 |
Target: 5'- gAUCCUCgGCCGGCggauGCCccaggucggugucGGCGcGGGAGc -3' miRNA: 3'- -UAGGAGgCGGCCG----UGG-------------CUGCuCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 33657 | 0.67 | 0.747646 |
Target: 5'- uUCgaCCGuCCGGCGC--GCGGGGAGGg -3' miRNA: 3'- uAGgaGGC-GGCCGUGgcUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 190742 | 0.67 | 0.747646 |
Target: 5'- cUCCccaUUCGCCGGUuCUGAUGGGGAc- -3' miRNA: 3'- uAGG---AGGCGGCCGuGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 90111 | 0.68 | 0.738443 |
Target: 5'- uUCaacCCGCUGGCGCCGcCGGccGGAGGc -3' miRNA: 3'- uAGga-GGCGGCCGUGGCuGCU--CCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 67680 | 0.68 | 0.738443 |
Target: 5'- uUCCcggUCCGaUCGGC-UCGAUGAGGggGu -3' miRNA: 3'- uAGG---AGGC-GGCCGuGGCUGCUCCuuC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 153651 | 0.68 | 0.738443 |
Target: 5'- cUCaUCCGCggCGGCGCCGGCGcgauGGAGa -3' miRNA: 3'- uAGgAGGCG--GCCGUGGCUGCu---CCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 102889 | 0.68 | 0.729157 |
Target: 5'- -gCCgCCGCCGGUagcgccgccGCCGcgAUGGGGGAGa -3' miRNA: 3'- uaGGaGGCGGCCG---------UGGC--UGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 131459 | 0.68 | 0.729157 |
Target: 5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3' miRNA: 3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 187205 | 0.68 | 0.719795 |
Target: 5'- -cCCUCCGCaCGGgGgagGAUGAGGAAGa -3' miRNA: 3'- uaGGAGGCG-GCCgUgg-CUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 86151 | 0.68 | 0.710367 |
Target: 5'- uUCUUCaCGCCGGCGCCGuucuUGGcGGAu- -3' miRNA: 3'- uAGGAG-GCGGCCGUGGCu---GCU-CCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 28990 | 0.68 | 0.700878 |
Target: 5'- -gUCUCCGgCGGCGgUGGCGAGGc-- -3' miRNA: 3'- uaGGAGGCgGCCGUgGCUGCUCCuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 143149 | 0.68 | 0.700878 |
Target: 5'- -aCCUgCGUCGGUGaugaCGACGAGGAc- -3' miRNA: 3'- uaGGAgGCGGCCGUg---GCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 82784 | 0.68 | 0.691338 |
Target: 5'- -gCgUCCGgUGGCGCCGACccauccggggguGGGGAAGu -3' miRNA: 3'- uaGgAGGCgGCCGUGGCUG------------CUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 116090 | 0.68 | 0.691338 |
Target: 5'- cUCgUCgGCCGaGCucauCCGGCGAGGGGu -3' miRNA: 3'- uAGgAGgCGGC-CGu---GGCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 99342 | 0.68 | 0.691338 |
Target: 5'- cUCCUCCGCCuccucGC-CCGACGAGcGuuGg -3' miRNA: 3'- uAGGAGGCGGc----CGuGGCUGCUC-CuuC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 180358 | 0.68 | 0.691338 |
Target: 5'- cUgCUCCGgCGGCACCGccACG-GGAAa -3' miRNA: 3'- uAgGAGGCgGCCGUGGC--UGCuCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 483 | 0.69 | 0.681753 |
Target: 5'- -gCCUCCggGCCGcGCGCCGcguccGCG-GGAAGg -3' miRNA: 3'- uaGGAGG--CGGC-CGUGGC-----UGCuCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 126274 | 0.69 | 0.681753 |
Target: 5'- gGUCCggaggccCCGCCGcGCgaACCGACGccgaAGGAGGc -3' miRNA: 3'- -UAGGa------GGCGGC-CG--UGGCUGC----UCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 127482 | 0.69 | 0.681753 |
Target: 5'- -aCC-CCGgCGcCACCGACGAGGAc- -3' miRNA: 3'- uaGGaGGCgGCcGUGGCUGCUCCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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