miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 115997 0.69 0.662481
Target:  5'- cUCgUCCGCCGacguGCGCCG-CGGGGGc- -3'
miRNA:   3'- uAGgAGGCGGC----CGUGGCuGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 111304 0.69 0.662481
Target:  5'- -aCCUCCGCCGGCAaggaucucgUCGGCGucaucuGGGu- -3'
miRNA:   3'- uaGGAGGCGGCCGU---------GGCUGCu-----CCUuc -5'
15746 3' -60.2 NC_004065.1 + 2988 0.69 0.652809
Target:  5'- -aCCUCU--CGGCGCCGACGAaccaucGGGAGg -3'
miRNA:   3'- uaGGAGGcgGCCGUGGCUGCU------CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 97940 0.69 0.643121
Target:  5'- uUCCUCCGgCGGCAgCG-CGucGAAGu -3'
miRNA:   3'- uAGGAGGCgGCCGUgGCuGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 147506 0.69 0.633426
Target:  5'- cGUCaUCCGCauguucggGGcCACCGAUGAGGggGu -3'
miRNA:   3'- -UAGgAGGCGg-------CC-GUGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 55384 0.7 0.61404
Target:  5'- aGUCCUCCGgcacCCGcGCaACCGACG-GGAGu -3'
miRNA:   3'- -UAGGAGGC----GGC-CG-UGGCUGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 82545 0.7 0.598564
Target:  5'- uUCC-CCGCCGGCACCacauggugcuuccaGCGGGGcGAGa -3'
miRNA:   3'- uAGGaGGCGGCCGUGGc-------------UGCUCC-UUC- -5'
15746 3' -60.2 NC_004065.1 + 164711 0.7 0.585068
Target:  5'- -gCCgCCGCCGGUcccACCacGCGGGGAAGg -3'
miRNA:   3'- uaGGaGGCGGCCG---UGGc-UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 152531 0.7 0.585068
Target:  5'- --gCUCCGCCGGCGCCGGCu------ -3'
miRNA:   3'- uagGAGGCGGCCGUGGCUGcuccuuc -5'
15746 3' -60.2 NC_004065.1 + 148605 0.7 0.585068
Target:  5'- aGUUCUCCGCCGGg---GACGAGGGAc -3'
miRNA:   3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 99150 0.7 0.575463
Target:  5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3'
miRNA:   3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 141618 0.7 0.575463
Target:  5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3'
miRNA:   3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 63882 0.71 0.556368
Target:  5'- -gCCgcugCCGCCGGCGCCGACGu----- -3'
miRNA:   3'- uaGGa---GGCGGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 76370 0.71 0.556368
Target:  5'- cUCCaUCgCGCCGGCGCCGcCGcGGAu- -3'
miRNA:   3'- uAGG-AG-GCGGCCGUGGCuGCuCCUuc -5'
15746 3' -60.2 NC_004065.1 + 133357 0.71 0.545944
Target:  5'- gAUCCUCCGUCGGgcgagccCGCCGACGccGAGa -3'
miRNA:   3'- -UAGGAGGCGGCC-------GUGGCUGCucCUUc -5'
15746 3' -60.2 NC_004065.1 + 164810 0.71 0.52809
Target:  5'- -gCCaCCGCCGGCacucugGCCGuuucCGAGGAGGa -3'
miRNA:   3'- uaGGaGGCGGCCG------UGGCu---GCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 112007 0.71 0.52809
Target:  5'- gAUCCUCCGUCGGgAggagGACGAGGAGc -3'
miRNA:   3'- -UAGGAGGCGGCCgUgg--CUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 73112 0.71 0.51878
Target:  5'- uUCCU-CGUCGGUGCCGGCgGAGGAu- -3'
miRNA:   3'- uAGGAgGCGGCCGUGGCUG-CUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 151208 0.72 0.509536
Target:  5'- -gCCUCCugaucaCCGGUACCGccggcGCGGGGAAGa -3'
miRNA:   3'- uaGGAGGc-----GGCCGUGGC-----UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 201295 0.72 0.509536
Target:  5'- -cCCUCCGgCGGC-CgGGgGAGGAGGa -3'
miRNA:   3'- uaGGAGGCgGCCGuGgCUgCUCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.