miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 82784 0.68 0.691338
Target:  5'- -gCgUCCGgUGGCGCCGACccauccggggguGGGGAAGu -3'
miRNA:   3'- uaGgAGGCgGCCGUGGCUG------------CUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 86151 0.68 0.710367
Target:  5'- uUCUUCaCGCCGGCGCCGuucuUGGcGGAu- -3'
miRNA:   3'- uAGGAG-GCGGCCGUGGCu---GCU-CCUuc -5'
15746 3' -60.2 NC_004065.1 + 90111 0.68 0.738443
Target:  5'- uUCaacCCGCUGGCGCCGcCGGccGGAGGc -3'
miRNA:   3'- uAGga-GGCGGCCGUGGCuGCU--CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 97921 0.67 0.774678
Target:  5'- -aCCUCgaaccgccgcgCGuCCGGCACCGGCGuGGcAGc -3'
miRNA:   3'- uaGGAG-----------GC-GGCCGUGGCUGCuCCuUC- -5'
15746 3' -60.2 NC_004065.1 + 97940 0.69 0.643121
Target:  5'- uUCCUCCGgCGGCAgCG-CGucGAAGu -3'
miRNA:   3'- uAGGAGGCgGCCGUgGCuGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 99150 0.7 0.575463
Target:  5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3'
miRNA:   3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 99342 0.68 0.691338
Target:  5'- cUCCUCCGCCuccucGC-CCGACGAGcGuuGg -3'
miRNA:   3'- uAGGAGGCGGc----CGuGGCUGCUC-CuuC- -5'
15746 3' -60.2 NC_004065.1 + 99615 0.67 0.79214
Target:  5'- --aUUCCGCCGGaCGgucgcgauacCCGGCGGGGAc- -3'
miRNA:   3'- uagGAGGCGGCC-GU----------GGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 100892 0.66 0.800681
Target:  5'- cUCCUCCGCCGcGCACUGcugauCGuccGGcAGg -3'
miRNA:   3'- uAGGAGGCGGC-CGUGGCu----GCu--CCuUC- -5'
15746 3' -60.2 NC_004065.1 + 102889 0.68 0.729157
Target:  5'- -gCCgCCGCCGGUagcgccgccGCCGcgAUGGGGGAGa -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGC--UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 106386 0.66 0.825453
Target:  5'- gAUCCUgaCGCCGGUgucgGCCGACcuGGAGu -3'
miRNA:   3'- -UAGGAg-GCGGCCG----UGGCUGcuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 107743 0.67 0.755851
Target:  5'- gAUCCUCgGCCGGCggauGCCccaggucggugucGGCGcGGGAGc -3'
miRNA:   3'- -UAGGAGgCGGCCG----UGG-------------CUGCuCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 109824 0.66 0.809085
Target:  5'- -cCCUCguCGCCGuccuGCugCGGCGGGGGGc -3'
miRNA:   3'- uaGGAG--GCGGC----CGugGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 111257 0.66 0.809085
Target:  5'- -gCCUCUGCCucgucGGCGCCGugacCGAGaaGAAGa -3'
miRNA:   3'- uaGGAGGCGG-----CCGUGGCu---GCUC--CUUC- -5'
15746 3' -60.2 NC_004065.1 + 111304 0.69 0.662481
Target:  5'- -aCCUCCGCCGGCAaggaucucgUCGGCGucaucuGGGu- -3'
miRNA:   3'- uaGGAGGCGGCCGU---------GGCUGCu-----CCUuc -5'
15746 3' -60.2 NC_004065.1 + 111713 0.67 0.756758
Target:  5'- -gUC-CCGCUGGCgacgagaacGCCGAUGAGGAc- -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 112007 0.71 0.52809
Target:  5'- gAUCCUCCGUCGGgAggagGACGAGGAGc -3'
miRNA:   3'- -UAGGAGGCGGCCgUgg--CUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 113485 0.66 0.841191
Target:  5'- aAUCCUCCacgGUCGGCACCguacgucucuuuGACGccGAGGc -3'
miRNA:   3'- -UAGGAGG---CGGCCGUGG------------CUGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 114953 0.66 0.832616
Target:  5'- aGUCggcgCCGCCGGCcuccagaACCGAUGAGuucGGAGa -3'
miRNA:   3'- -UAGga--GGCGGCCG-------UGGCUGCUC---CUUC- -5'
15746 3' -60.2 NC_004065.1 + 115997 0.69 0.662481
Target:  5'- cUCgUCCGCCGacguGCGCCG-CGGGGGc- -3'
miRNA:   3'- uAGgAGGCGGC----CGUGGCuGCUCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.