Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15746 | 3' | -60.2 | NC_004065.1 | + | 116090 | 0.68 | 0.691338 |
Target: 5'- cUCgUCgGCCGaGCucauCCGGCGAGGGGu -3' miRNA: 3'- uAGgAGgCGGC-CGu---GGCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 118760 | 0.73 | 0.438398 |
Target: 5'- uUCuCUCgGUcaCGGCGCCGACGAGGcAGa -3' miRNA: 3'- uAG-GAGgCG--GCCGUGGCUGCUCCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 120583 | 0.67 | 0.774678 |
Target: 5'- -aCCUCCggcGCCGGUcucgGCCGggugcACGAGGAu- -3' miRNA: 3'- uaGGAGG---CGGCCG----UGGC-----UGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 122935 | 0.67 | 0.774678 |
Target: 5'- -aCCcgaCGCCGGCGuuCCaGACGAGGAu- -3' miRNA: 3'- uaGGag-GCGGCCGU--GG-CUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 123753 | 0.66 | 0.833404 |
Target: 5'- aGUUCUgCGCCaGCACCcuggucgaguacGACGAGGuGGa -3' miRNA: 3'- -UAGGAgGCGGcCGUGG------------CUGCUCCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 126274 | 0.69 | 0.681753 |
Target: 5'- gGUCCggaggccCCGCCGcGCgaACCGACGccgaAGGAGGc -3' miRNA: 3'- -UAGGa------GGCGGC-CG--UGGCUGC----UCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 127482 | 0.69 | 0.681753 |
Target: 5'- -aCC-CCGgCGcCACCGACGAGGAc- -3' miRNA: 3'- uaGGaGGCgGCcGUGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 131459 | 0.68 | 0.729157 |
Target: 5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3' miRNA: 3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 133357 | 0.71 | 0.545944 |
Target: 5'- gAUCCUCCGUCGGgcgagccCGCCGACGccGAGa -3' miRNA: 3'- -UAGGAGGCGGCC-------GUGGCUGCucCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 133503 | 0.66 | 0.833404 |
Target: 5'- cUCCUCggacucguCGUCGuccuCCGACGAGGAGGa -3' miRNA: 3'- uAGGAG--------GCGGCcgu-GGCUGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 137491 | 0.66 | 0.825453 |
Target: 5'- uUCCcgugCCGCCGGgGC--ACGAGGAAc -3' miRNA: 3'- uAGGa---GGCGGCCgUGgcUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 138815 | 0.66 | 0.841191 |
Target: 5'- cUUCUCCGgCGGCGCCGAUGc----- -3' miRNA: 3'- uAGGAGGCgGCCGUGGCUGCuccuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 139790 | 0.67 | 0.774678 |
Target: 5'- -gCCUUCGCCGaCGCCGACcucuuGGGAAa -3' miRNA: 3'- uaGGAGGCGGCcGUGGCUGc----UCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 141618 | 0.7 | 0.575463 |
Target: 5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3' miRNA: 3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 141699 | 0.67 | 0.79214 |
Target: 5'- uUUCUCCGCUcuguuuucaGGCG-CGACGAGGccGAGg -3' miRNA: 3'- uAGGAGGCGG---------CCGUgGCUGCUCC--UUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 143149 | 0.68 | 0.700878 |
Target: 5'- -aCCUgCGUCGGUGaugaCGACGAGGAc- -3' miRNA: 3'- uaGGAgGCGGCCGUg---GCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 143715 | 0.66 | 0.841191 |
Target: 5'- -aCCag-GUCGGCGCCGGCGAGcGAGa -3' miRNA: 3'- uaGGaggCGGCCGUGGCUGCUCcUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 146810 | 0.67 | 0.79214 |
Target: 5'- cUCCUCCcGgCGGCGCgcACGGGGGAc -3' miRNA: 3'- uAGGAGG-CgGCCGUGgcUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 147470 | 0.67 | 0.782596 |
Target: 5'- -gCC-CCGCUggaagcaccauguGGUGCCGGCGGGGAa- -3' miRNA: 3'- uaGGaGGCGG-------------CCGUGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 147506 | 0.69 | 0.633426 |
Target: 5'- cGUCaUCCGCauguucggGGcCACCGAUGAGGggGu -3' miRNA: 3'- -UAGgAGGCGg-------CC-GUGGCUGCUCCuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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