miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 148605 0.7 0.585068
Target:  5'- aGUUCUCCGCCGGg---GACGAGGGAc -3'
miRNA:   3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 151208 0.72 0.509536
Target:  5'- -gCCUCCugaucaCCGGUACCGccggcGCGGGGAAGa -3'
miRNA:   3'- uaGGAGGc-----GGCCGUGGC-----UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 152299 0.72 0.464438
Target:  5'- aGUCCUgCGgCGGCggcgguGCCGGCGGGGAc- -3'
miRNA:   3'- -UAGGAgGCgGCCG------UGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 152531 0.7 0.585068
Target:  5'- --gCUCCGCCGGCGCCGGCu------ -3'
miRNA:   3'- uagGAGGCGGCCGUGGCUGcuccuuc -5'
15746 3' -60.2 NC_004065.1 + 152929 0.67 0.78347
Target:  5'- -gCUgCCGCCgcGGCAaaUCGACGAGGAGa -3'
miRNA:   3'- uaGGaGGCGG--CCGU--GGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 153280 0.67 0.788687
Target:  5'- --aCgaggCCGCCGGCGCCGcgcccguccccgcCGAGGAGu -3'
miRNA:   3'- uagGa---GGCGGCCGUGGCu------------GCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 153651 0.68 0.738443
Target:  5'- cUCaUCCGCggCGGCGCCGGCGcgauGGAGa -3'
miRNA:   3'- uAGgAGGCG--GCCGUGGCUGCu---CCUUc -5'
15746 3' -60.2 NC_004065.1 + 154674 0.66 0.817344
Target:  5'- cUCCUCU-CgGGCACCG-UGAGGAc- -3'
miRNA:   3'- uAGGAGGcGgCCGUGGCuGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 156912 1.07 0.002734
Target:  5'- gAUCCUCCGCCGGCACCGACGAGGAAGa -3'
miRNA:   3'- -UAGGAGGCGGCCGUGGCUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 162161 0.66 0.841191
Target:  5'- gAUCggCCGCCGGCugCGGCGcAGc--- -3'
miRNA:   3'- -UAGgaGGCGGCCGugGCUGC-UCcuuc -5'
15746 3' -60.2 NC_004065.1 + 164202 0.67 0.780845
Target:  5'- -aUCUCCGCCGGCAUCGcguucACGAucgccucgauccgcGGGAu -3'
miRNA:   3'- uaGGAGGCGGCCGUGGC-----UGCU--------------CCUUc -5'
15746 3' -60.2 NC_004065.1 + 164711 0.7 0.585068
Target:  5'- -gCCgCCGCCGGUcccACCacGCGGGGAAGg -3'
miRNA:   3'- uaGGaGGCGGCCG---UGGc-UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 164810 0.71 0.52809
Target:  5'- -gCCaCCGCCGGCacucugGCCGuuucCGAGGAGGa -3'
miRNA:   3'- uaGGaGGCGGCCG------UGGCu---GCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 169716 0.66 0.833404
Target:  5'- -gCgUCCGUCGGCugCGG-GAcGGGAGa -3'
miRNA:   3'- uaGgAGGCGGCCGugGCUgCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 172069 0.67 0.756758
Target:  5'- gGUCCUCCGUgGcCGCCGcgguucgaGCGGGGGAc -3'
miRNA:   3'- -UAGGAGGCGgCcGUGGC--------UGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 174111 0.66 0.816525
Target:  5'- -aCUUCUGCCGGCGCgGACuccgugaGAGGu-- -3'
miRNA:   3'- uaGGAGGCGGCCGUGgCUG-------CUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 180358 0.68 0.691338
Target:  5'- cUgCUCCGgCGGCACCGccACG-GGAAa -3'
miRNA:   3'- uAgGAGGCgGCCGUGGC--UGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 181220 0.67 0.774678
Target:  5'- -gCCguUCgGCCGGCugCGugGAcGGGAc -3'
miRNA:   3'- uaGG--AGgCGGCCGugGCugCU-CCUUc -5'
15746 3' -60.2 NC_004065.1 + 187205 0.68 0.719795
Target:  5'- -cCCUCCGCaCGGgGgagGAUGAGGAAGa -3'
miRNA:   3'- uaGGAGGCG-GCCgUgg-CUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 190742 0.67 0.747646
Target:  5'- cUCCccaUUCGCCGGUuCUGAUGGGGAc- -3'
miRNA:   3'- uAGG---AGGCGGCCGuGGCUGCUCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.