miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 153280 0.67 0.788687
Target:  5'- --aCgaggCCGCCGGCGCCGcgcccguccccgcCGAGGAGu -3'
miRNA:   3'- uagGa---GGCGGCCGUGGCu------------GCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 152929 0.67 0.78347
Target:  5'- -gCUgCCGCCgcGGCAaaUCGACGAGGAGa -3'
miRNA:   3'- uaGGaGGCGG--CCGU--GGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 152531 0.7 0.585068
Target:  5'- --gCUCCGCCGGCGCCGGCu------ -3'
miRNA:   3'- uagGAGGCGGCCGUGGCUGcuccuuc -5'
15746 3' -60.2 NC_004065.1 + 152299 0.72 0.464438
Target:  5'- aGUCCUgCGgCGGCggcgguGCCGGCGGGGAc- -3'
miRNA:   3'- -UAGGAgGCgGCCG------UGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 151208 0.72 0.509536
Target:  5'- -gCCUCCugaucaCCGGUACCGccggcGCGGGGAAGa -3'
miRNA:   3'- uaGGAGGc-----GGCCGUGGC-----UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 148605 0.7 0.585068
Target:  5'- aGUUCUCCGCCGGg---GACGAGGGAc -3'
miRNA:   3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 147506 0.69 0.633426
Target:  5'- cGUCaUCCGCauguucggGGcCACCGAUGAGGggGu -3'
miRNA:   3'- -UAGgAGGCGg-------CC-GUGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 147470 0.67 0.782596
Target:  5'- -gCC-CCGCUggaagcaccauguGGUGCCGGCGGGGAa- -3'
miRNA:   3'- uaGGaGGCGG-------------CCGUGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 146810 0.67 0.79214
Target:  5'- cUCCUCCcGgCGGCGCgcACGGGGGAc -3'
miRNA:   3'- uAGGAGG-CgGCCGUGgcUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 143715 0.66 0.841191
Target:  5'- -aCCag-GUCGGCGCCGGCGAGcGAGa -3'
miRNA:   3'- uaGGaggCGGCCGUGGCUGCUCcUUC- -5'
15746 3' -60.2 NC_004065.1 + 143149 0.68 0.700878
Target:  5'- -aCCUgCGUCGGUGaugaCGACGAGGAc- -3'
miRNA:   3'- uaGGAgGCGGCCGUg---GCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 141699 0.67 0.79214
Target:  5'- uUUCUCCGCUcuguuuucaGGCG-CGACGAGGccGAGg -3'
miRNA:   3'- uAGGAGGCGG---------CCGUgGCUGCUCC--UUC- -5'
15746 3' -60.2 NC_004065.1 + 141618 0.7 0.575463
Target:  5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3'
miRNA:   3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 139790 0.67 0.774678
Target:  5'- -gCCUUCGCCGaCGCCGACcucuuGGGAAa -3'
miRNA:   3'- uaGGAGGCGGCcGUGGCUGc----UCCUUc -5'
15746 3' -60.2 NC_004065.1 + 138815 0.66 0.841191
Target:  5'- cUUCUCCGgCGGCGCCGAUGc----- -3'
miRNA:   3'- uAGGAGGCgGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 137491 0.66 0.825453
Target:  5'- uUCCcgugCCGCCGGgGC--ACGAGGAAc -3'
miRNA:   3'- uAGGa---GGCGGCCgUGgcUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 133503 0.66 0.833404
Target:  5'- cUCCUCggacucguCGUCGuccuCCGACGAGGAGGa -3'
miRNA:   3'- uAGGAG--------GCGGCcgu-GGCUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 133357 0.71 0.545944
Target:  5'- gAUCCUCCGUCGGgcgagccCGCCGACGccGAGa -3'
miRNA:   3'- -UAGGAGGCGGCC-------GUGGCUGCucCUUc -5'
15746 3' -60.2 NC_004065.1 + 131459 0.68 0.729157
Target:  5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3'
miRNA:   3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 127482 0.69 0.681753
Target:  5'- -aCC-CCGgCGcCACCGACGAGGAc- -3'
miRNA:   3'- uaGGaGGCgGCcGUGGCUGCUCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.